fourDNData
4DN data package
Bioconductor version: Release (3.20)
fourDNData is a data package giving programmatic access to Hi-C contact matrices uniformly processed by the [4DN consortium](https://www.4dnucleome.org/). The matrices are available in the multi-resolution `.mcool` format.
Author: Jacques Serizay [aut, cre]
Maintainer: Jacques Serizay <jacquesserizay at gmail.com>
Citation (from within R, enter
citation("fourDNData")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("fourDNData")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("fourDNData")| fourDNData | HTML | R Script |
| Reference Manual | ||
| LICENSE | Text |
Details
| biocViews | ExperimentData, SequencingData |
| Version | 1.6.0 |
| License | MIT + file LICENSE |
| Depends | R (>= 4.2) |
| Imports | BiocFileCache, HiCExperiment, GenomicRanges, IRanges, S4Vectors, utils, tools |
| System Requirements | |
| URL | https://github.com/js2264/fourDNData |
| Bug Reports | https://github.com/js2264/fourDNData/issues |
See More
| Suggests | rtracklayer, dplyr, testthat, methods, BiocStyle, knitr, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | OHCA |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | fourDNData_1.6.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/fourDNData |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/fourDNData |
| Package Short Url | https://bioconductor.org/packages/fourDNData/ |
| Package Downloads Report | Download Stats |