epimutacionsData

Data for epimutacions package

Bioconductor version: Release (3.20)

This package includes the data necessary to run functions and examples in epimutacions package. Collection of DNA methylation data. The package contains 2 datasets: (1) Control ( GEO: GSE104812), (GEO: GSE97362) case samples; and (2) reference panel (GEO: GSE127824). It also contains candidate regions to be epimutations in 450k methylation arrays.

Author: Leire Abarrategui [aut, cre], Juan R. Gonzalez [aut], Carlos Ruiz-Arenas [aut], Carles Hernandez-Ferrer [aut]

Maintainer: Leire Abarrategui <abarrategui.leire at gmail.com>

Citation (from within R, enter citation("epimutacionsData")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("epimutacionsData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("epimutacionsData")

data repository for epimutacions package	HTML	R Script
Reference Manual	PDF
NEWS	Text
LICENSE	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	ExperimentData, ExperimentHub, Homo_sapiens_Data, MethylationArrayData, MicroarrayData
Version	1.10.0
License	MIT + file LICENSE
Depends	R (>= 4.2.0)
Imports
System Requirements
URL	https://github.com/LeireAbarrategui/epimutacionsData
Bug Reports	https://github.com/LeireAbarrategui/epimutacionsData/issues

Suggests	rmarkdown, BiocStyle, knitr, ExperimentHub, minfi
Linking To
Enhances
Depends On Me	epimutacions
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	epimutacionsData_1.10.0.tar.gz
Windows Binary (x86_64)
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/epimutacionsData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/epimutacionsData
Package Short Url	https://bioconductor.org/packages/epimutacionsData/
Package Downloads Report	Download Stats