GSE62944
GEO accession data GSE62944 as a SummarizedExperiment
Bioconductor version: Release (3.20)
TCGA processed RNA-Seq data for 9264 tumor and 741 normal samples across 24 cancer types and made them available as GEO accession [GSE62944](http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE62944). GSE62944 data have been parsed into a SummarizedExperiment object available in ExperimentHub.
Author: Sonali Arora
Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>
citation("GSE62944")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("GSE62944")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GSE62944")| Raw TCGA data using Bioconductor's ExperimentHub | HTML | R Script |
| Reference Manual |
Details
| biocViews | DNASeqData, ExperimentData, Genome, RNASeqData |
| Version | 1.34.0 |
| License | Artistic-2.0 |
| Depends | Biobase, GEOquery |
| Imports | |
| System Requirements | |
| URL | http://bioconductor.org/packages/release/bioc/html/GSE62944.html |
See More
| Suggests | ExperimentHub(>= 0.99.6), knitr, BiocStyle, rmarkdown, DESeq2 |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | GSEABenchmarkeR |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | GSE62944_1.34.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/GSE62944 |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/GSE62944 |
| Package Short Url | https://bioconductor.org/packages/GSE62944/ |
| Package Downloads Report | Download Stats |