XhybExamples-class {XhybCasneuf}R Documentation

Class "XhybExamples"

Description

Class containing information of cross-hybridisation examples

Objects from the Class

Objects can be created by calls of the form new("XhybExamples", ...).

Slots

X:
Object of class "character" contains the ID of probe set X
Y:
Object of class "character" contains the ID of probe set Y
IVX:
Object of class "numeric" contains the expression intensities of X in the Tissue dataset
IVY:
Object of class "numeric" contains the expression intensities of Y in the Tissue dataset
IVXi:
Object of class "matrix" contains the expression intensities of X's reporters in the Tissue dataset
ai:
Object of class "numeric" contains the alignment scores of X's reporters to Y's transcript sequence

Methods

plotExample
signature(ex = "XhybExamples"): ...

Author(s)

Tineke Casneuf tine@ebi.ac.uk

References

Casneuf, Van de Peer and Huber (submitted); AtgenExpress data used: Schmid, M., Davison, T. S., Henz, S. R., Pape, U. J., Demar, M., Vingron, M. Schoelkopf, B. Weigel, D., and Lohmann, J. (2005) A gene expression map of Arabidopsis development. Nature Genetics, 37, 501-506.

Examples

data(ex1)
data(ex2)
data(ex3)
plotExample(ex1)
plotExample(ex2)
plotExample(ex3)

[Package XhybCasneuf version 1.0.0 Index]