orf800                package:yeastCC                R Documentation

_C_e_l_l _c_y_c_l_e _r_e_g_u_l_a_t_e_d _g_e_n_e_s _f_r_o_m _S_p_e_l_l_m_a_n _e_t _a_l. (_1_9_9_8)

_D_e_s_c_r_i_p_t_i_o_n:

     Vector of ORF names for the 800 cell cycle regulated genes
     identified by the analysis of Spellman et al. (1998). The
     expression measures and sample descriptions are stored in the
     'exprSet' instance 'yeastCC'.

_U_s_a_g_e:

     data(orf800)

_F_o_r_m_a_t:

     The format is: chr [1:800] "YAL022C" "YAL040C" "YAL053W" "YAL067C"
     "YAR003W" "YAR007C" ...

_S_o_u_r_c_e:

     The 800 ORF names were obtained from the file  "CellCycle98.xls"
     on the  Yeast Cell Cycle Analysis Project website (<URL:
     http://genome-www.stanford.edu/cellcycle/>).  The raw data
     (images, TIFF) and processed data "combine.txt" used to create the
     'exprSet' instance 'yeastCC' are also available on the website. 
     Gene annotation information is available from the Saccharomyces
     Genome Database (SGD, <URL:
     http://genome-www.stanford.edu/Saccharomyces/gene_list.shtml>).
     The script "createYeastCC.R" for generating the 'yeastCC' package
     is available in  <URL: ../doc>.

_R_e_f_e_r_e_n_c_e_s:

     Spellman et al. (1998). Comprehensive Identification of Cell
     Cycle-regulated Genes of the Yeast Saccharomyces cerevisiae by
     Microarray Hybridization. _Molecular Biology of the Cell_, 9:
     3273-3297 (<URL: ../doc>).

_E_x_a_m_p_l_e_s:

     data(orf800)

