NAME

    Bio::Tradis - Bio-Tradis contains a set of tools to analyse the output
    from TraDIS analyses. For more information on the TraDIS method, see
    http://genome.cshlp.org/content/19/12/2308

VERSION

    version 1.4.1

SYNOPSIS

    Bio-Tradis provides functionality to:

      * detect TraDIS tags in a BAM file - Bio::Tradis::DetectTags

      * add the tags to the reads - Bio::Tradis::AddTagsToSeq

      * filter reads in a FastQ file containing a user defined tag -
      Bio::Tradis::FilterTags

      * remove tags - Bio::Tradis::RemoveTags

      * map to a reference genome - Bio::Tradis::Map

      * create an insertion site plot file - Bio::Tradis::TradisPlot

    Most of these functions are available as standalone scripts or as perl
    modules.

AUTHOR

    Carla Cummins <path-help@sanger.ac.uk>

COPYRIGHT AND LICENSE

    This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute.

    This is free software, licensed under:

      The GNU General Public License, Version 3, June 2007