function [f,relres,iter]=isgram(s,g,a,varargin)
%-*- texinfo -*-
%@deftypefn {Function} isgram
%@verbatim
%ISGRAM  Spectrogram inversion
%   Usage:  f=isgram(c,g,a);
%           f=isgram(c,g,a,Ls);
%           [f,relres,iter]=isgram(...);
%
%   Input parameters:
%         c       : Array of coefficients.
%         g       : Window function.
%         a       : Length of time shift.
%         Ls      : length of signal.
%   Output parameters:
%         f       : Signal.
%         relres  : Vector of residuals.
%         iter    : Number of iterations done.
%
%   ISGRAM(s,g,a) attempts to invert a spectrogram computed by :
%
%     s = abs(dgt(f,g,a,M)).^2;
%
%   using an iterative method.
%
%   ISGRAM(c,g,a,Ls) does as above but cuts or extends f to length Ls.
%
%   If the phase of the spectrogram is known, it is much better to use
%   idgt.
%
%   [f,relres,iter]=ISGRAM(...) additionally return the residuals in a
%   vector relres and the number of iteration steps iter.
%
%   Generally, if the spectrogram has not been modified, the iterative
%   algorithm will converge slowly to the correct result. If the
%   spectrogram has been modified, the algorithm is not guaranteed to
%   converge at all.  
%
%   ISGRAM takes the following parameters at the end of the line of input
%   arguments:
%
%     'lt',lt      Specify the lattice type. See the help on MATRIX2LATTICETYPE.
%
%     'zero'       Choose a starting phase of zero. This is the default
%
%     'rand'       Choose a random starting phase.
%
%     'int'        Construct a starting phase by integration. Only works
%                  for Gaussian windows.
%
%     'griflim'    Use the Griffin-Lim iterative method, this is the
%                  default.
%
%     'bfgs'       Use the limited-memory Broyden Fletcher Goldfarb
%                  Shanno (BFGS) method.  
%
%     'tol',t      Stop if relative residual error is less than the specified tolerance.  
%
%     'maxit',n    Do at most n iterations.
%
%     'print'      Display the progress.
%
%     'quiet'      Don't print anything, this is the default.
%
%     'printstep',p  If 'print' is specified, then print every p'th
%                    iteration. Default value is p=10;
%
%   The BFGS method makes use of the minFunc software. To use the BFGS method, 
%   please install the minFunc software from:
%   http://www.cs.ubc.ca/~schmidtm/Software/minFunc.html.
%
%   Examples:
%   ---------
%
%   To reconstruct the phase of 'greasy', use the following:
%
%     % Setup the problem and the coefficients
%     f=greasy;
%     g='gauss';
%     a=20; M=200;
%     c=dgt(f,g,a,M);
%     s=abs(c).^2;
%     theta=angle(c);
%
%     % Reconstruct and get spectrogram and angle
%     r=isgram(s,g,a);
%     c_r=dgt(r,g,a,M);
%     s_r=abs(c_r).^2;
%     theta_r=angle(c_r);
%
%     % Compute the angular difference
%     d1=abs(theta-theta_r);
%     d2=2*pi-d1;
%     anglediff=min(d1,d2);
%
%     % Plot the difference in spectrogram and phase
%     figure(1);
%     plotdgt(s./s_r,a,16000,'clim',[-10,10]);
%     colormap([bone;flipud(bone)])
%     title('Relative difference in spectrogram');
%
%     figure(2);
%     plotdgt(anglediff,a,16000,'lin');
%     colormap(bone);
%     title('Difference in angle');
%
%
%   References:
%     R. Decorsiere and P. L. Soendergaard. Modulation filtering using an
%     optimization approach to spectrogram reconstruction. In Proceedings of
%     the Forum Acousticum, 2011.
%     
%     D. Griffin and J. Lim. Signal estimation from modified short-time
%     Fourier transform. IEEE Trans. Acoust. Speech Signal Process.,
%     32(2):236--243, 1984.
%     
%     D. Liu and J. Nocedal. On the limited memory BFGS method for large
%     scale optimization. Mathematical programming, 45(1):503--528, 1989.
%     
%@end verbatim
%@strong{Url}: @url{http://ltfat.github.io/doc/gabor/isgram.html}
%@seealso{isgramreal, frsynabs, dgt}
%@end deftypefn

% Copyright (C) 2005-2018 Peter L. Soendergaard <peter@sonderport.dk> and others.
% This file is part of LTFAT version 2.4.0
%
% This program is free software: you can redistribute it and/or modify
% it under the terms of the GNU General Public License as published by
% the Free Software Foundation, either version 3 of the License, or
% (at your option) any later version.
%
% This program is distributed in the hope that it will be useful,
% but WITHOUT ANY WARRANTY; without even the implied warranty of
% MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
% GNU General Public License for more details.
%
% You should have received a copy of the GNU General Public License
% along with this program.  If not, see <http://www.gnu.org/licenses/>.
  
%   AUTHOR : Remi Decorsiere and Peter L. Soendergaard.
%   REFERENCE: OK

% Check input paramameters.

  if nargin<3
    error('%s: Too few input parameters.',upper(mfilename));
  end;
  
  if numel(g)==1
    error('g must be a vector (you probably forgot to supply the window function as input parameter.)');
  end;
  
  definput.keyvals.Ls=[];
  definput.keyvals.lt=[0 1];
  definput.keyvals.tol=1e-6;
  definput.keyvals.maxit=100;
  definput.keyvals.printstep=10;
  definput.flags.method={'griflim','bfgs'};
  definput.flags.print={'quiet','print'};
  definput.flags.startphase={'zero','rand','int'};
  
  [flags,kv,Ls]=ltfatarghelper({'Ls','tol','maxit'},definput,varargin);

  M=size(s,1);
  N=size(s,2);
  W=size(s,3);
  
  if ~isnumeric(a) || ~isscalar(a)
      error('%s: "a" must be a scalar',upper(mfilename));
  end;
  
  if rem(a,1)~=0
      error('%s: "a" must be an integer',upper(mfilename));
  end;
  
  L=N*a;
  
  Ltest=dgtlength(L,a,M,kv.lt);
  
  if Ltest~=L
      error(['%s: Incorrect size of coefficient array or "a" parameter. See ' ...
             'the help of DGTLENGTH for the requirements.'], ...
            upper(mfilename))
  end;
  
  
  sqrt_s=sqrt(s);
  
  if flags.do_zero
    % Start with a phase of zero.
    c=sqrt_s;
  end;
  
  if flags.do_rand
    c=sqrt_s.*exp(2*pi*i*rand(M,N));
  end;
  
  if flags.do_int
      if kv.lt(2)>1
          error(['%s: The integration initilization is not implemented for ' ...
                 'non-sep lattices.'],upper(mfilename));
      end;
          
      c=constructphase(s,g,a);
  end;

  % gabwin is called after constructphase above, because constructphase
  % needs the window as a string/cell
  g=gabwin(g,a,M,L,kv.lt,'callfun',upper(mfilename));
    
  
  gd = gabdual(g,a,M,L);
    
  % For normalization purposes
  norm_s=norm(s,'fro');
  
  relres=zeros(kv.maxit,1);
  if flags.do_griflim
    
    for iter=1:kv.maxit
        %c = comp_dgt_proj(c,g,gd,a,M,L);
        if kv.lt(2)==1
            f=comp_idgt(c,gd,a,kv.lt,0,0);
            c=comp_dgt(f,g,a,M,kv.lt,0,0,0);
        else
            f=comp_idgt(c,gd,a,kv.lt,0,0);
            c=comp_dgt(f,g,a,M,kv.lt,0,0,0);            
        end;
      
      relres(iter)=norm(abs(c).^2-s,'fro')/norm_s;
      
      c=sqrt_s.*exp(i*angle(c));
      
      if flags.do_print
        if mod(iter,kv.printstep)==0
          fprintf('ISGRAM: Iteration %i, residual = %f\n',iter,relres(iter));
        end;    
      end;
      
      if relres(iter)<kv.tol
        relres=relres(1:iter);
        break;
      end;
      
    end;
    
    f=comp_idgt(c,gd,a,kv.lt,0,0);
  end;
  
  if flags.do_bfgs
    if exist('minFunc')~=2
      error(['To use the BFGS method in ISGRAMREAL, please install the minFunc ' ...
             'software from http://www.cs.ubc.ca/~schmidtm/Software/minFunc.html.']);
    end;
    
    % Setting up the options for minFunc
    opts = struct;
    opts.display = kv.printstep;
    opts.maxiter = kv.maxit;
    
    % Don't limit the number of function evaluations, just the number of
    % time-steps.
    opts.MaxFunEvals = 1e9;
    opts.usemex = 0;
    
    f0 = comp_idgt(c,gd,a,kv.lt,0,0);
    [f,fval,exitflag,output]=minFunc(@objfun,f0,opts,g,a,M,s,kv.lt);
    % First entry of output.trace.fval is the objective function
    % evaluated on the initial input. Skip it to be consistent.
    relres = output.trace.fval(2:end)/norm_s;
    iter = output.iterations;
  end;

    
  % Cut or extend f to the correct length, if desired.
  if ~isempty(Ls)
    f=postpad(f,Ls);
  else
    Ls=L;
  end;
  
  f=comp_sigreshape_post(f,Ls,0,[0; W]);

%  Subfunction to compute the objective function for the BFGS method.
function [f,df]=objfun(x,g,a,M,s,lt);
  L=size(s,2)*a;
  c=comp_dgt(x,g,a,M,lt,0,0,0);
  
  inner=abs(c).^2-s;
  f=norm(inner,'fro')^2;
  
  df=4*real(conj(comp_idgt(inner.*c,g,a,lt,0,0)));


