tspplot                package:tspair                R Documentation

_G_r_a_p_h_i_c_a_l _d_i_s_p_l_a_y _o_f _t_s_p _o_b_j_e_c_t_s

_D_e_s_c_r_i_p_t_i_o_n:

     Graphical display of tsp objects

_U_s_a_g_e:

       tspplot(tspobj)

_A_r_g_u_m_e_n_t_s:

  tspobj: A tsp object.

_D_e_t_a_i_l_s:

     tspplot() creates a plot of each top scoring pair.The figure plots
      the expression for the first gene in the TSP pair versus the
     expression  for the second gene in the TSP pair across arrays. The
     user defined  groups are plotted in the colors red and blue. The
     score for the pair is shown across the top of each plot. If there
     is more than one TSP,  hitting return will cycle from one TSP to
     the next.

_V_a_l_u_e:

     Nothing of interest.

_A_u_t_h_o_r(_s):

     Jeffrey T. Leek jtleek@jhu.edu

_R_e_f_e_r_e_n_c_e_s:

     D. Geman, C. d'Avignon, D. Naiman and R. Winslow, "Classifying
     gene expression profiles from pairwise mRNA comparisons, Statist.
     Appl. in Genetics and Molecular Biology, 3, 2004.

_S_e_e _A_l_s_o:

     'tspcalc', 'ts.pair', 'tspsig','predict.tsp', 'summary.tsp'

_E_x_a_m_p_l_e_s:

       ## Not run: 
       ## Load data
       data(tspdata) 
       tsp1 <- tspcalc(dat,grp)
       tspplot(tsp1)
      
     ## End(Not run)

