Entry: SpikeInExpressionSet-class
Aliases: class:SpikeInExpressionSet SpikeInExpressionSet-class SpikeInExpressionSet SpikeInExpressionSet-methods initialize,SpikeInExpressionSet-method spikeIn spkSplit spikeIn,SpikeInExpressionSet-method spikeIn<-,SpikeInExpressionSet,matrix-method spkSplit,SpikeInExpressionSet-method
Keywords: classes
Description: Class to Contain and Describe High-Throughput Expression Level Assays with Spike-in Data
URL: ../../../library/spkTools/html/SpikeInExpressSet-class.html

Entry: affy
Aliases: affy
Keywords: datasets
Description: SpikeInExpressionSet of Affymetrix Spike-in Experiment Data
URL: ../../../library/spkTools/html/affy.html

Entry: plotSpkBox
Aliases: plotSpkBox
Keywords: hplot
Description: Boxplots of Fold Changes Calculated by spkBox
URL: ../../../library/spkTools/html/plotSpkBox.html

Entry: spkAccSD
Aliases: spkAccSD
Keywords: manip
Description: Accuracy Standard Deviation
URL: ../../../library/spkTools/html/spkAccSD.html

Entry: spkAll
Aliases: spkAll
Keywords: hplot manip
Description: Spike-in Functions Wrapper
URL: ../../../library/spkTools/html/spkAll.html

Entry: spkAnova
Aliases: spkAnova
Keywords: manip
Description: Anova Model for Microarray Spike-in Data
URL: ../../../library/spkTools/html/spkAnova.html

Entry: spkBal
Aliases: spkBal
Keywords: manip
Description: Quantify Microarry Spike-in Design Imbalance
URL: ../../../library/spkTools/html/spkBal.html

Entry: spkBox
Aliases: spkBox
Keywords: manip
Description: Fold Change Calculations
URL: ../../../library/spkTools/html/spkBox.html

Entry: spkDensity
Aliases: spkDensity
Keywords: hplot
Description: Spike-in Density Plot
URL: ../../../library/spkTools/html/spkDensity.html

Entry: spkGNN
Aliases: spkGNN
Keywords: manip
Description: Genes Needed to Detect N True Positives
URL: ../../../library/spkTools/html/spkGNN.html

Entry: spkMA
Aliases: spkMA
Keywords: hplot
Description: MA Plots
URL: ../../../library/spkTools/html/spkMA.html

Entry: spkPair
Aliases: spkPair
Keywords: manip
Description: Pairwise Comparisons for Spike-in Genes
URL: ../../../library/spkTools/html/spkPair.html

Entry: spkPairNS
Aliases: spkPairNS
Keywords: manip
Description: Pairwise Comparisons for Non-Spike-in Genes
URL: ../../../library/spkTools/html/spkPairNS.html

Entry: spkPot
Aliases: spkPot
Keywords: manip
Description: Probability of being in the Top
URL: ../../../library/spkTools/html/spkPot.html

Entry: spkQuantile
Aliases: spkQuantile
Keywords: manip
Description: Empirical Quantiles
URL: ../../../library/spkTools/html/spkQuantile.html

Entry: spkSlope
Aliases: spkSlope
Keywords: hplot manip
Description: Signal Detect Slope Plot
URL: ../../../library/spkTools/html/spkSlope.html

Entry: spkTools
Aliases: spkTools-package spkTools
Keywords: package
Description: Tools for Spike-in Data Analysis and Visualization
URL: ../../../library/spkTools/html/spkTools.html

Entry: spkVar
Aliases: spkVar
Keywords: manip
Description: Spike-in Variance
URL: ../../../library/spkTools/html/spkVar.html

Entry: summarySpkBox
Aliases: summarySpkBox
Keywords: manip
Description: Summary of Fold Changes Calculated by spkBox
URL: ../../../library/spkTools/html/summarySpkBox.html
