variantSI           package:oneChannelGUI           R Documentation

_T_h_i_s _f_u_n_c_t_i_o_n _a_l_l_o_w_s _f_i_l_t_e_r_i_n_g _o_n _t_h_e _b_a_s_i_s _o_f _v_a_r_i_a_n_t _e_x_o_n_s

_D_e_s_c_r_i_p_t_i_o_n:

     The function interesects a list of alternative splice exon-level
     probe sets detected by oneChannelGUI analysis and intersects it to
     the list of exon-level probe sets associated to variant exons,
     i.e. these exons that are associated only to a subset of all
     isoforms associated to a gene. The table of variant Exon is stored
     in RRE database and is retrieved by the function updating the UCSC
     tables linking probe set ids with variant exons, located in the
     General Tools menu. The variantSI function also attaches to the
     variant exons table the deltaSI associated exon-level probe set.

_U_s_a_g_e:

     variantSI()

_N_o_t_e:

     This fuction needs the presence of Splice Index

_A_u_t_h_o_r(_s):

     Raffaele A Calogero

_S_e_e _A_l_s_o:

     variantExons, plotVariantSI

