etDelta               package:occugene               R Documentation

_N_u_m_b_e_r _o_f _N_e_w _O_R_F _K_n_o_c_k_o_u_t_s

_D_e_s_c_r_i_p_t_i_o_n:

     Estimates the number of new knockouts in next d clones.

_U_s_a_g_e:

     etDelta(d,anno,clone)

_A_r_g_u_m_e_n_t_s:

       d: number of new clones

    anno: 2-column matrix of annotation

   clone: vector

_D_e_t_a_i_l_s:

     Estimates the number of new ORF knockouts in the next d clones
     using the  method outlined by Efron and Thisted.

_V_a_l_u_e:

expected: Expected value

variance: Variance

_A_u_t_h_o_r(_s):

     Oliver Will owill4@yahoo.com

_R_e_f_e_r_e_n_c_e_s:

     See the book chapter O. Will (**) in ** and also Efron, B. and 
     Thisted, R. (1976) Estimating the number of unseen species: How
     many words did  Shakespere know? _Biometrika_. 63, 435-447.

_E_x_a_m_p_l_e_s:

     data(sampleAnnotation)
     data(sampleInsertions)
     a.data <- sampleAnnotation
     experiment <- sampleInsertions
     orf <- cbind(a.data$first,a.data$last)
     clone <- experiment$position
     etDelta(10,orf,clone)

