binInsert              package:occugene              R Documentation

_I_n_s_e_r_t _L_o_c_a_t_i_o_n_s

_D_e_s_c_r_i_p_t_i_o_n:

     Returns the number of ORF knockouts.

_U_s_a_g_e:

     binInsert(insert,orf,returnCounts=FALSE,overlap=NULL,DEBUG=FALSE)

_A_r_g_u_m_e_n_t_s:

  insert: List of insertion locations

     orf: 2-column matrix of annotation

returnCounts: Return the number of insertions

 overlap: Number of shared targets

   DEBUG: Flag to debug the code

_D_e_t_a_i_l_s:

     Finds the number of ORFs that have an insertion given a list of
     locations. If  the returnCounts flag is true, the function returns
     the number of insertions per ORF. Uses the function hist for gains
     in speed.

_V_a_l_u_e:

     Returns a numeric or an object

_A_u_t_h_o_r(_s):

     Oliver Will owill4@yahoo.com

_R_e_f_e_r_e_n_c_e_s:

     See the book chapter O. Will (**) in **.

_E_x_a_m_p_l_e_s:

     # **

