Entry: checkfit
Aliases: checkfit checkfit.gagafit
Keywords: distribution models
Description: Check goodness-of-fit of GaGa and MiGaGa models
URL: ../../../library/gaga/html/checkfit.html

Entry: classpred
Aliases: classpred classpred.gagafit
Keywords: htest models
Description: Predict the class that a new sample belongs to.
URL: ../../../library/gaga/html/classpred.html

Entry: dcgamma
Aliases: dcgamma rcgamma mcgamma
Keywords: distribution
Description: Approximate gamma shape distribution
URL: ../../../library/gaga/html/dcgamma.html

Entry: findgenes
Aliases: findgenes findgenes.gagafit
Keywords: htest models
Description: Find differentially expressed genes after GaGa fit.
URL: ../../../library/gaga/html/findgenes.html

Entry: fitGG
Aliases: fitGG
Keywords: models
Description: Fit GaGa hierarchical model
URL: ../../../library/gaga/html/fitGG.html

Entry: geneclus
Aliases: geneclus geneclus.gagafit
Keywords: htest models
Description: Cluster genes into expression patterns.
URL: ../../../library/gaga/html/geneclus.html

Entry: getpar
Aliases: getpar getpar.gagafit
Keywords: models
Description: Extract hyper-parameter estimates from a gagafit object
URL: ../../../library/gaga/html/getpar.html

Entry: parest
Aliases: parest parest.gagafit
Keywords: models
Description: Parameter estimates and posterior probabilities of differential expression for GaGa and MiGaGa model
URL: ../../../library/gaga/html/parest.html

Entry: posmeansGG
Aliases: posmeansGG posmeansGG.gagafit
Keywords: distribution models
Description: Gene-specific posterior means
URL: ../../../library/gaga/html/posmeansGG.html

Entry: powclasspred
Aliases: powclasspred powclasspred.gagafit
Keywords: htest models
Description: Expected probability that a future sample is correctly classified.
URL: ../../../library/gaga/html/powclasspred.html

Entry: print.gagaclus
Aliases: print.gagaclus
Keywords: print
Description: Print an object of class gagaclus
URL: ../../../library/gaga/html/print.gagaclus.html

Entry: print.gagafit
Aliases: print.gagafit
Keywords: print
Description: Print an object of class gagafit
URL: ../../../library/gaga/html/print.gagafit.html

Entry: print.gagahyp
Aliases: print.gagahyp
Keywords: print
Description: Print an object of class gagahyp
URL: ../../../library/gaga/html/print.gagahyp.html

Entry: simGG
Aliases: simGG
Keywords: distribution models
Description: Prior predictive simulation
URL: ../../../library/gaga/html/simGG.html

Entry: simnewsamples
Aliases: simnewsamples simnewsamples.gagafit
Keywords: distribution models
Description: Posterior predictive simulation
URL: ../../../library/gaga/html/simnewsamples.html
