flowJoCompensate-methods     package:flowFlowJo     R Documentation

_C_o_m_p_e_n_s_a_t_e _f_l_o_w _c_y_t_o_m_e_t_r_y _d_a_t_a _t_h_e _s_a_m_e _w_a_y _a_s _F_l_o_w_J_o _d_o_e_s

_D_e_s_c_r_i_p_t_i_o_n:

     FlowJo currently implements its compensation/spillover matrices
     differently than they are implemented in the general flow
     cytometry community. Currently, in order to obtain similar results
     (e.g. MFIs and cell counts) between FlowJo and flowCore, it is
     necessary to apply the compensation matrix to the data in the
     usual way (ie. via {}``compensate''), and then to divide all of
     the observed data by the maximum of the values in the compensation
     matrix. The flowFlowJo package implements a method,
     flowJoCompensate, to automatically take care of this issue.

_M_e_t_h_o_d_s:



     _f_l_o_w_D_a_t_a = "_f_l_o_w_F_r_a_m_e", _c_o_m_p_M_a_t_r_i_x = "_m_a_t_r_i_x" flowJoCompensate can
          take in either a flowFrame or a flowSet as well as a
          numerical matrix of compensation values. 


     _f_l_o_w_D_a_t_a = "_f_l_o_w_S_e_t", _c_o_m_p_M_a_t_r_i_x = "_m_a_t_r_i_x" flowJoCompensate can
          take in either a flowFrame or a flowSet as well as a
          numerical matrix of compensation values. 

