Entry: dyebias.application.subset
Aliases: dyebias.application.subset
Keywords: misc
Description: Return a subset of reporters that can be dye bias-corrected reasonably well
URL: ../../../library/dyebias/html/dyebias.application.subset.html

Entry: dyebias.apply.correction
Aliases: dyebias.apply.correction
Keywords: misc
Description: Perform dye bias correction using the GASSCO method
URL: ../../../library/dyebias/html/dyebias.apply.correction.html

Entry: dyebias.boxplot
Aliases: dyebias.boxplot
Keywords: hplot misc
Description: Creates boxplots of the reporters with the strongest dye bias
URL: ../../../library/dyebias/html/dyebias.boxplot.html

Entry: dyebias.estimate.iGSDBs
Aliases: dyebias.estimate.iGSDBs
Keywords: misc
Description: Estimate intrinsic gene specific dye biases (part of the GASSCO method)
URL: ../../../library/dyebias/html/dyebias.estimate.iGSDBs.html

Entry: dyebias.monotonicity
Aliases: dyebias.monotonicity
Keywords: misc htest
Description: Calculate the degree of monotonicity of the dye bias across the slides.
URL: ../../../library/dyebias/html/dyebias.monotonicity.html

Entry: dyebias.monotonicityplot
Aliases: dyebias.monotonicityplot
Keywords: hplot misc
Description: Show the degree of monotonicity of the dye bias across the slides.
URL: ../../../library/dyebias/html/dyebias.monotonicityplot.html

Entry: dyebias.rgplot
Aliases: dyebias.rgplot dyebias.maplot
Keywords: hplot misc
Description: Produce scatterplots of the hybridization, with strongest dye biases highlighted.
URL: ../../../library/dyebias/html/dyebias.rgplot.html

Entry: dyebias.trendplot
Aliases: dyebias.trendplot
Keywords: hplot misc
Description: Creates a trend-plot of all reporters, binned by dye bias, with all slides ordered by slide bias.
URL: ../../../library/dyebias/html/dyebias.trendplot.html
