makePalCon               package:cosmo               R Documentation

_C_o_n_s_t_r_u_c_t_i_n_g _a _p_a_l_i_n_d_r_o_m_i_c _c_o_n_s_t_r_a_i_n_t

_D_e_s_c_r_i_p_t_i_o_n:

     This function constructs a 'palCon' object representing a
     constraint on the unknown position weight matrix that requires the
     two intervals to be palindromes of each other.

_U_s_a_g_e:

     makePalCon(int1, int2, errBnd)

_A_r_g_u_m_e_n_t_s:

    int1: 'numeric' the first interval

    int2: 'numeric' the second interval

  errBnd: 'numeric' bound on how much corresponding nucleotide
          frequency are allowed to deviate from each other

_V_a_l_u_e:

     An object of class 'palCon'.

_A_u_t_h_o_r(_s):

     Fabian Gallusser, fgallusser@berkeley.edu

_S_e_e _A_l_s_o:

     'boundCon', 'subMotifCon', 'palCon',  'posFreqCon',
     'shapeDiffCon', 'palCon'

_E_x_a_m_p_l_e_s:

     pfc <- makePalCon(1, 3, 0.05)

