RESOURCERER.annotation.to.ID
                        Link RESOURCERER annotation file to expression
                        ID
SIM-package             Statistical Integration of Microarrays
acgh.data               Array-comparative genomic hybridization data
                        example
assemble.data           Assemble the data to run the integrated
                        analysis
chrom.table             Table with chromosome arm positions
expr.data               Expression data example
impute.nas.by.surrounding
                        Impute NA's in array-CGH data
integrated.analysis     Integrated analysis of expression and copy
                        number microarray data
link.metadata           Link a metadata annotation file to expression
                        ID
samples                 Samples for example data
sim.plot.pvals.on.genome
                        Plot the p-values in whole genome overview
sim.plot.pvals.on.region
                        P-value histograms and p-values along the
                        genome per region
sim.plot.zscore.heatmap
                        Association heatmap from z-scores
tabulate.pvals          Sums significant p-values for the analyzed
                        regions
tabulate.top.dep.features
                        Lists the p-values for the dependent features
tabulate.top.indep.features
                        Lists the mean z-scores for the independent
                        features
