trim                package:RNAither                R Documentation

_C_o_m_p_u_t_e _t_h_e _r_e_p_l_i_c_a_t_e _m_e_a_n _w_i_t_h _t_r_i_m_m_e_d _v_a_l_u_e_s

_D_e_s_c_r_i_p_t_i_o_n:

     Computes the mean of replicate values, omitting the highest and
     the lowest 5

_U_s_a_g_e:

     trim(Ivec, na.rm = T)

_A_r_g_u_m_e_n_t_s:

    Ivec: All channel values for a specific siRNA/gene 

   na.rm: Removes NA values 

_V_a_l_u_e:

     A double giving the trimmed mean of the given replicate values,
     i.e. omitting the highest and the lowest 5

_S_e_e _A_l_s_o:

     'rms', 'closestToZero', 'furthestFromZero', 'summarizeReps',
     'summarizeRepsNoFiltering'

_E_x_a_m_p_l_e_s:

     data(exampleHeader, package="RNAither")
     data(exampleDataset, package="RNAither")

     Indexes <- findReplicates(dataset, "GeneName", "CPSF1")
     replicatemean <- trim(dataset$SigIntensity[Indexes])

