LesageRaw              package:PCpheno              R Documentation

_D_a_t_a _f_r_o_m _L_e_s_a_g_e _e_t _a_l. _2_0_0_5

_D_e_s_c_r_i_p_t_i_o_n:

     Lesage et al. (2005) assembled a network of 316 interactions among
     163 genes using deletion mutants in CHS1, CHS3, CHS4, CHS5, CHS6,
     CHS7 and BNI4 in a synthetic genetic array analysis.

_U_s_a_g_e:

     data(LesageRaw)

_F_o_r_m_a_t:

     'LesageRaw' is a 5 column dataframe.


     _S_Y_S_T_E_M_A_T_I_C Systematic gene names. NOTE: All mutants are isogenic
          to BY4741 (MATa his3\u0394 leu2\u0394 met15\u0394 ura3\u0394)
          except anp1\u0394 and mnn9\u0394 that are isogenic to BY4742
          (MAT\u03b1 his3\u0394 leu2\u0394 lys2\u0394 ura3\u0394).

     _C_O_M_M_U_N Commun gene names.

     _C_F_W Mutants showing increased, decreased or wild type sensitivity
          to Calcofluor white are scored s, r, or wt, respectively.

     _C_h_i_t_i_n_L_e_v_e_l Chitin level (nmole GlcNAc/mg dry weight). Values are
          an average of at least three independent determinations.
          Values statistically higher and lower than wild type (p <
          0.01) are highlighted in red and green, respectively.

     _C_h_i_t_i_n_L_e_v_e_l._S_D Standard deviation of the average of at least three
          independent determinations of Chitin level.

_A_u_t_h_o_r(_s):

     N. LeMeur

_S_o_u_r_c_e:

     Lesage et al. (2005), supplementary information: <URL:
     http://www.biomedcentral.com/1471-2156/6/8/suppl/S2> or  <URL:
     ftp://genome-ftp.stanford.edu/pub/yeast/systematic_results/phenotypes>

_R_e_f_e_r_e_n_c_e_s:

     Lesage G, Shapiro J, Specht CA, Sdicu AM, Menard P, Hussein S,
     Tong AH, Boone C, Bussey H. (2005) An interactional network of
     genes involved in chitin synthesis in Saccharomyces cerevisiae.BMC
     Genet.6(1):8. PMID: 15715908

_E_x_a_m_p_l_e_s:

     data(LesageRaw)
     str(LesageRaw)

