Entry: CGcount
Aliases: CGcount
Keywords: 
Description: Determining the count of CpG dinucleotides for a set of genomic locations
URL: ../../../library/MEDME/html/CGcount.html

Entry: MEDME
Aliases: MEDME
Keywords: 
Description: Determining the logistic model of MeDIP enrichment in respect to the expected DNA methylation level
URL: ../../../library/MEDME/html/MEDME.html

Entry: MEDME.readFiles
Aliases: MEDME.readFiles
Keywords: 
Description: reading sgr or gff files for MEDME
URL: ../../../library/MEDME/html/MEDME.readFiles.html

Entry: MEDME.writeFiles
Aliases: MEDME.writeFiles
Keywords: 
Description: writeFiles sgr or gff files from MEDME output
URL: ../../../library/MEDME/html/MEDME.writeFiles.html

Entry: MEDMEset-class
Aliases: MEDMEset-class [,MEDMEset-method AMS,MEDMEset-method CG,MEDMEset-method chr,MEDMEset-method org,MEDMEset-method initialize,MEDMEset-method logR,MEDMEset-method pos,MEDMEset-method RMS,MEDMEset-method show,MEDMEset-method smoothed,MEDMEset-method AMS CG CGcounts chr org organism logR pos RMS smoothed
Keywords: classes
Description: Class "MEDMEset"
URL: ../../../library/MEDME/html/MEDMEset-class.html

Entry: predict
Aliases: predict
Keywords: 
Description: Applying the logistic model on MeDIP enrichment data
URL: ../../../library/MEDME/html/predict.html

Entry: smooth
Aliases: smooth
Keywords: 
Description: Determining weighted MeDIP data
URL: ../../../library/MEDME/html/smooth.html

Entry: testMEDMEset
Aliases: testMEDMEset
Keywords: 
Description: Dataset of class MEDMEset for testing MEDME
URL: ../../../library/MEDME/html/testMEDMEset.html
