parseKGML2Graph          package:KEGGgraph          R Documentation

_P_a_r_s_e _K_G_M_L _f_i_l_e_s _i_n_t_o _K_E_G_G _g_r_a_p_h

_D_e_s_c_r_i_p_t_i_o_n:

     This function is a wrapper for parseKGML and KEGGpathway2Graph. It
     takes two actions: first it reads in the KGML file and parses it
     into an object of 'KEGGPathway-class', the second step it calls
     'KEGGpathway2Graph' function to return the graph model.

_U_s_a_g_e:

     parseKGML2Graph(file, ...)

_A_r_g_u_m_e_n_t_s:

    file: Name of KGML file

     ...: other parameters passed to KEGGpathway2Graph, see
          'KEGGpathway2Graph' 

_V_a_l_u_e:

     A graph object.

_A_u_t_h_o_r(_s):

     Jitao David Zhang <URL: mailto:j.zhang@dkfz.de>

_E_x_a_m_p_l_e_s:

     sfile <- system.file("extdata/hsa04010.xml",package="KEGGgraph")
     gR <- parseKGML2Graph(sfile,expandGenes=TRUE)
     gR

