kgmlFileName2PathwayName      package:KEGGgraph      R Documentation

_C_o_n_v_e_r_t _K_G_M_L _f_i_l_e _n_a_m_e _t_o _p_a_t_h_w_a_y _n_a_m_e

_D_e_s_c_r_i_p_t_i_o_n:

     The function uses KEGG package and converts KGML file name into
     human readable pathway name.

_U_s_a_g_e:

     kgmlFileName2PathwayName(filename)

_A_r_g_u_m_e_n_t_s:

filename: A KGML file name

_D_e_t_a_i_l_s:

     So far it only supports KGML files organized by species.

     NOTE: there is issue of package loading sequence to use this
     function: the 'KEGG.db' must be loaded before 'KEGGgraph' to use
     it properly. Otherwise the 'mget' returns error of
     'KEGGPATHID2NAME' is not a environment. So far I don't where does
     this bug come from, so I commented out the examples.

_V_a_l_u_e:

     A character string of pathway name

_A_u_t_h_o_r(_s):

     Jitao David Zhang <URL: mailto:j.zhang@dkfz.de>

