readPairs-methods            package:HELP            R Documentation

_R_e_a_d _N_i_m_b_l_e_g_e_n ._p_a_i_r _f_i_l_e_s (_m_e_t_h_o_d_s)

_D_e_s_c_r_i_p_t_i_o_n:

     Methods for extracting data from corresponding files in the
     Nimblegen .pair format.

_M_e_t_h_o_d_s:



     _x = "_m_i_s_s_i_n_g", _y = "_m_i_s_s_i_n_g", _z = "_m_i_s_s_i_n_g" Handle empty function
          call 

     _x = "_v_e_c_t_o_r", _y = "_m_i_s_s_i_n_g", _z = "_m_i_s_s_i_n_g" Handle single vector
          input. If two values specified in vector, reinterpret
          function call with two character inputs. Otherwise, handle as
          empty function call. 

     _x = "_v_e_c_t_o_r", _y = "_v_e_c_t_o_r", _z = "_m_i_s_s_i_n_g" Handle two vector input.
           If vectors of unit length, reinterpret function call with
          two character inputs. Otherwise, handle as improper function
          call. 

     _x = "_c_h_a_r_a_c_t_e_r", _y = "_c_h_a_r_a_c_t_e_r", _z = "_E_x_p_r_e_s_s_i_o_n_S_e_t" Handle two
          character vector inputs, each specifiying a filename to use
          when reading pair information. Pair data will be written to
          an 'ExpressionSet' object. 

     _x = "_c_h_a_r_a_c_t_e_r", _y = "_c_h_a_r_a_c_t_e_r", _z = "_c_h_a_r_a_c_t_e_r" Handle two
          character vector inputs, each specifiying a filename to use
          when reading pair information. Pair data will be written to a
          database. 

_A_u_t_h_o_r(_s):

     Reid F. Thompson (rthompso@aecom.yu.edu)

_S_e_e _A_l_s_o:

     'readPairs'

