BaseTrack-class         package:GenomeGraphs         R Documentation

_C_l_a_s_s "_B_a_s_e_T_r_a_c_k" _r_e_p_r_e_s_e_n_t_s _b_a_s_e _s_p_e_c_i_f_i_c _d_a_t_a

_D_e_s_c_r_i_p_t_i_o_n:

     Represents specific data, e.g. how many times was every base
     sequenced

_O_b_j_e_c_t_s _f_r_o_m _t_h_e _C_l_a_s_s:

     Objects can be created by calls of the form 'new("BaseTrack",
     ...)'.

_S_l_o_t_s:


     '_b_a_s_e': Object of class '"numeric"'. Is a vector of base positions 

     '_v_a_l_u_e': Object of class '"numeric"'.  Is a vector of
          corresponding values for every base

     '_s_t_r_a_n_d': Object of class '"character"' represents that DNA strand

     '_d_p': Object of class DisplayPars to control various features of
          how the track is displayed.

_E_x_t_e_n_d_s:

     Class '"gdObject"', directly.

_M_e_t_h_o_d_s:


     _s_h_o_w 'signature(object = "BaseTrack")': ... 

_A_u_t_h_o_r(_s):

     Steffen Durinck

_R_e_f_e_r_e_n_c_e_s:

     http://www.stat.berkeley.edu/~steffen/

_S_e_e _A_l_s_o:

     objects to See Also as 'gdPlot'

_E_x_a_m_p_l_e_s:

     if (interactive()) {
     data("exampleData", package="GenomeGraphs")
     ga <- new("GenomeAxis")
     bt <- new("BaseTrack", base = yeastCons1[,1], value = yeastCons1[,2],
               dp = DisplayPars(color = "darkblue"))
     gdPlot(list(ga, bt))
     }

