GGtools-package	GGtools-package
aafSNP	aafSNP-class
aafSNP-class	aafSNP-class
chunksize	gwSnpTests
chunksize-class	gwSnpTests
cisSnpTests	cisSnpTests
coerce,cwSnpScreenResult,RangedData-method	trackSet-methods
GGtools	GGtools-package
gwSnpTests	gwSnpTests
gwSnpTests,formula,smlSet,cnumOrMissing,ANY-method	gwSnpTests
gwSnpTests,formula,smlSet,cnumOrMissing-method	gwSnpTests
gwSnpTests,formula,smlSet,snpdepth,ANY-method	gwSnpTests
gwSnpTests,formula,smlSet,snpdepth,chunksize-method	gwSnpTests
gwSnpTests,formula,smlSet,snpdepth-method	gwSnpTests
hbTestResults-class	hbTestResults-class
hbTests	hbTests-methods
hbTests,genesym,smlSet,chrnum,numeric,numeric-method	hbTests-methods
hbTests-methods	hbTests-methods
hla2set	hla2set
hmceuB36.2021	hmceuB36.2021
hscores	hbTestResults-class
hscores,hbTestResults-method	hbTestResults-class
invokePhase	invokePhase-methods
invokePhase,phaseInput,chrnum,character,character,character,logical-method	invokePhase-methods
invokePhase,snp.matrix,chrnum,character,character,character,logical-method	invokePhase-methods
invokePhase-methods	invokePhase-methods
locs	hbTestResults-class
locs,hbTestResults-method	hbTestResults-class
masterSnps	masterSnps
parsePh.out	snpm2phase
personalHap	snpm2phase
phaseInput-class	snpm2phase
plot,cwSnpScreenResult,missing-method	plot-methods
plot,filteredGwSnpScreenResult,ANY-method	plot-methods
plot,filteredMultiGwSnpScreenResult,ANY-method	plot-methods
plot,snp.reg.imputation,missing-method	plot-methods
pvals	hbTestResults-class
pvals,hbTestResults-method	hbTestResults-class
residTests	gwSnpTests
residTests,cwSnpScreenResult,smlSet,formula,missing-method	gwSnpTests
smtest	snpm2mapLD
snpm2mapLD	snpm2mapLD
snpm2phase	snpm2phase
strMultPop	strMultPop
topSnps	topSnps-methods
topSnps,cwSnpScreenResult-method	topSnps-methods
topSnps,gwSnpScreenResult-method	topSnps-methods
topSnps-methods	topSnps-methods
