Entry: DFP-internal
Aliases: .skipOddValues .fuzzyDiscretization .fuzzyPatterns .calculateMembershipFunctions .discretizeExpressionValues .calculateFuzzyPatterns .calculateDiscriminantFuzzyPattern .plotGeneMF .computeMembershipLow .computeMembershipMedium .computeMembershipHigh .setValuesLow .setValuesMedium .setValuesHigh
Keywords: internal
Description: Internal DFP objects
URL: ../../../library/DFP/html/DFP-internal.html

Entry: DFP-package
Aliases: DFP-package DFP
Keywords: package
Description: DFP Package Overview
URL: ../../../library/DFP/html/DFP-package.html

Entry: ExpressionLevel-class
Aliases: ExpressionLevel-class show,ExpressionLevel-method
Keywords: classes
Description: Class "ExpressionLevel"
URL: ../../../library/DFP/html/ExpressionLevel-class.html

Entry: HighExpressionLevel-class
Aliases: HighExpressionLevel-class computeMembership,HighExpressionLevel-method setValues,HighExpressionLevel-method
Keywords: classes
Description: Class "HighExpressionLevel"
URL: ../../../library/DFP/html/HighExpressionLevel-class.html

Entry: LowExpressionLevel-class
Aliases: LowExpressionLevel-class computeMembership,LowExpressionLevel-method setValues,LowExpressionLevel-method
Keywords: classes
Description: Class "LowExpressionLevel"
URL: ../../../library/DFP/html/LowExpressionLevel-class.html

Entry: MediumExpressionLevel-class
Aliases: MediumExpressionLevel-class computeMembership,MediumExpressionLevel-method setValues,MediumExpressionLevel-method
Keywords: classes
Description: Class "MediumExpressionLevel"
URL: ../../../library/DFP/html/MediumExpressionLevel-class.html

Entry: calculateDiscriminantFuzzyPattern
Aliases: calculateDiscriminantFuzzyPattern
Keywords: manip
Description: Calculates the Discriminant Fuzzy Pattern to select significative genes
URL: ../../../library/DFP/html/calculateDiscriminantFuzzyPattern.html

Entry: calculateFuzzyPatterns
Aliases: calculateFuzzyPatterns
Keywords: manip
Description: Calculates a Fuzzy Pattern for each category of the samples
URL: ../../../library/DFP/html/calculateFuzzyPatterns.html

Entry: calculateMembershipFunctions
Aliases: calculateMembershipFunctions
Keywords: manip
Description: Calculates Membership Functions
URL: ../../../library/DFP/html/calculateMembershipFunctions.html

Entry: discretizeExpressionValues
Aliases: discretizeExpressionValues
Keywords: manip
Description: Function to discretize gene expression data
URL: ../../../library/DFP/html/discretizeExpressionValues.html

Entry: discriminantFuzzyPattern
Aliases: discriminantFuzzyPattern
Keywords: manip
Description: Discriminant Fuzzy Pattern to filter genes
URL: ../../../library/DFP/html/discriminantFuzzyPattern.html

Entry: plotDiscriminantFuzzyPattern
Aliases: plotDiscriminantFuzzyPattern
Keywords: manip
Description: Plots the Discriminant Fuzzy Pattern of the relevant genes
URL: ../../../library/DFP/html/plotDiscriminantFuzzyPattern.html

Entry: plotMembershipFunctions
Aliases: plotMembershipFunctions
Keywords: manip
Description: Plots the Membership Functions (Low, Medium, High) used to discretize gene expression values
URL: ../../../library/DFP/html/plotMembershipFunctions.html

Entry: readCSV
Aliases: readCSV
Keywords: manip
Description: Creates an ExpressionSet with an AnnotatedDataFrame from CSV files
URL: ../../../library/DFP/html/readCSV.html

Entry: rmadataset
Aliases: rmadataset
Keywords: datasets
Description: A sample ExpressionSet object
URL: ../../../library/DFP/html/rmadataset.html

Entry: show-methods
Aliases: show-methods
Keywords: methods
Description: Prints the slots (attributes) of an ExpressionLevel object
URL: ../../../library/DFP/html/show-methods.html

Entry: showDiscreteValues
Aliases: showDiscreteValues
Keywords: manip
Description: Prints the labels to which the algorithm converts the gene expression values
URL: ../../../library/DFP/html/showDiscreteValues.html

Entry: showFuzzyPatterns
Aliases: showFuzzyPatterns
Keywords: manip
Description: Plots the Fuzzy Patterns corresponding to a class
URL: ../../../library/DFP/html/showFuzzyPatterns.html
