createGSEAFiles          package:ArrayTools          R Documentation

_A _W_r_a_p_p_e_r _F_u_n_c_t_i_o_n _t_o _c_r_e_a_t_e *._G_C_T _a_n_d *._C_L_S _f_o_r _G_S_E_A _a_n_a_l_y_s_i_s

_D_e_s_c_r_i_p_t_i_o_n:

     A Wrapper Function to create *.GCT and *.CLS for GSEA analysis

_U_s_a_g_e:

     createGSEAFiles(mydir = getwd(), eSet, catVar)

_A_r_g_u_m_e_n_t_s:

   mydir: directory where you would like to store the files

    eSet: an ExpressionSet

  catVar: variable of interest

_V_a_l_u_e:

     Creating *.GCT and *.CLS for GSEA

_A_u_t_h_o_r(_s):

     Xiwei Wu, Arthur Li

_R_e_f_e_r_e_n_c_e_s:

     'http://www.broad.mit.edu/gsea/'

_S_e_e _A_l_s_o:

     'output.cls', 'output.gct'

_E_x_a_m_p_l_e_s:

     data(eSetExample)
     ## Not run: createGSEAFiles (mydir, eSetExample, "Treatment")

