stamINode-class             package:stam             R Documentation

_I_n_n_e_r _N_o_d_e_s _i_n _C_l_a_s_s_i_f_i_e_r _N_e_t_s _b_y _S_t_A_M

_D_e_s_c_r_i_p_t_i_o_n:

     Objects of this class represent inner nodes of classifier nets as
     they are generated by structured analysis of microarray data.
     These nodes only contain children but never  hold direct
     annotations of genes.

_O_b_j_e_c_t_s _f_r_o_m _t_h_e _C_l_a_s_s:

     Objects can be created by calls of the form  'new("stamINode", ID,
     GOidx, children)'.

     _I_D is the GO identifier as character string

     _G_O_i_d_x environment attributing indices to all GO indentifiers

     _c_h_i_l_d_r_e_n indeces of all children

     Exactly one of 'GOidx' and 'children' must be defined, the other
     set to NULL (default)

_S_l_o_t_s:


     '_c_h_i_l_d_r_e_n': Object of class '"numeric"', indeces of the node's 
          direct children in the Gene Ontology.

     '_w_e_i_g_h_t_s': Object of class '"numeric"', weights attributed to the 
          node's direct children.

     See 'stamNode-class' fot 'ID', 'category', 'replacedParents' and 
     'supNode'.

_E_x_t_e_n_d_s:

     Class '"stamNode"', directly.

_M_e_t_h_o_d_s:


     _p_r_i_n_t 'signature(x = "stamINode")': print information on the inner
          node.

     _w_r_i_t_e_H_T_M_L 'signature(x = "stamINode")': generate HTML information
          on the inner node.

_A_u_t_h_o_r(_s):

     Claudio Lottaz

_S_e_e _A_l_s_o:

     'stamNode-class', 'stamLeaf-class'

