argoView-class          package:rtracklayer          R Documentation

_C_l_a_s_s "_a_r_g_o_V_i_e_w"

_D_e_s_c_r_i_p_t_i_o_n:

     An object representing a view of a genome in the Argo browser.

_O_b_j_e_c_t_s _f_r_o_m _t_h_e _C_l_a_s_s:

     Objects may be created through calls of the form
     'browserView(session, ...)' where 'session' is an instance of
     'argoSession'.

_S_l_o_t_s:


     '_j_r_e_f': Object of class '"jobjRef"' holding a reference to the
          low-level Argo object. 

     '_s_e_s_s_i_o_n': Object of class '"browserSession"' to which this view
          belongs. 

_E_x_t_e_n_d_s:

     Class '"browserView"', directly.

_M_e_t_h_o_d_s:


     '_a_c_t_i_v_e_V_i_e_w(_o_b_j_e_c_t)' Returns a logical indicating whether this
          view is the active view. 

     '_c_l_o_s_e(_c_o_n)' Closes this view. 

     '_g_e_n_o_m_e_S_e_g_m_e_n_t(_o_b_j_e_c_t)' Obtains the 'genomeSegment' displayed by
          this view. 

     '_g_e_n_o_m_e_S_e_g_m_e_n_t(_o_b_j_e_c_t) <- _v_a_l_u_e' Sets the 'genomeSegment'
          displayed by the view. 

     '_t_r_a_c_k_s(_o_b_j_e_c_t)' Gets the names of the visible tracks. 

     '_t_r_a_c_k_s<-(_o_b_j_e_c_t)' Sets the visible tracks by name. Note that in
          Argo track visibility is global. 

_A_u_t_h_o_r(_s):

     Michael Lawrence

_S_e_e _A_l_s_o:

     'browserView' for creating instances from a 'argoSession'.

