Entry: HVDMcheck
Aliases: HVDMcheck
Keywords: IO ts
Description: Checks that an object of class ExpressionSet is compliant with HVDM
URL: ../../../library/rHVDM/html/HVDMcheck.html

Entry: HVDMreport
Aliases: HVDMreport
Keywords: IO ts
Description: generates an HTML report using the input
URL: ../../../library/rHVDM/html/HVDMreport.html

Entry: estimerrors
Aliases: estimerrors
Keywords: IO ts
Description: computes the standard deviation of the measurement error using pre-calculated tables specific to the plattform or user-defined table
URL: ../../../library/rHVDM/html/estimerrors.html

Entry: fitgene
Aliases: fitgene
Keywords: ts
Description: Fits the optimal kinetic parameter values for a particular gene.
URL: ../../../library/rHVDM/html/fitgene.html

Entry: fiveGyMAS5
Aliases: fiveGyMAS5
Keywords: datasets
Description: Example data for the rHVDM package (time course of irradiated human T cells)
URL: ../../../library/rHVDM/html/fiveGyMAS5.html

Entry: genestoscreen
Aliases: genestoscreen
Keywords: datasets
Description: Genes differentially expressed
URL: ../../../library/rHVDM/html/genestoscreen.html

Entry: leastnoisychips
Aliases: leastnoisychips
Keywords: datasets
Description: Identifiers of the three least noisy arrays in the p53 experiment
URL: ../../../library/rHVDM/html/leastnoisychips.html

Entry: p53traingenes
Aliases: p53traingenes
Keywords: datasets
Description: Known p53 targets
URL: ../../../library/rHVDM/html/p53traingenes.html

Entry: rHVDMplattforms
Aliases: rHVDMplattforms
Keywords: datasets
Description: plattform-specific repository allowing to estimate measurement errors
URL: ../../../library/rHVDM/html/rHVDMplattforms.html

Entry: screening
Aliases: screening
Keywords: ts
Description: Fits the optimal kinetic parameter values for several genes.
URL: ../../../library/rHVDM/html/screening.html

Entry: training
Aliases: training
Keywords: ts
Description: Performs the HVDM training step and returns a list containing the results
URL: ../../../library/rHVDM/html/training.html
