AffyGenePDInfoPkgSeed-class  package:pdInfoBuilder  R Documentation

_C_l_a_s_s "_A_f_f_y_G_e_n_e_P_D_I_n_f_o_P_k_g_S_e_e_d" _f_o_r _t_h_e _S_e_n_s_e _T_a_r_g_e_t _g_e_n_e-_l_e_v_e_l _a_r_r_a_y

_D_e_s_c_r_i_p_t_i_o_n:

     container for parameters related to pdmapping package construction
     for ST gene level array

_O_b_j_e_c_t_s _f_r_o_m _t_h_e _C_l_a_s_s:

     Objects can be created by calls of the form
     'new("AffyGenePDInfoPkgSeed", pgfFile, clfFile, probeFile,
     transFile, ...)'.

_S_l_o_t_s:


     '_p_g_f_F_i_l_e': Object of class '"ScalarCharacter"' path to pgf 

     '_c_l_f_F_i_l_e': Object of class '"ScalarCharacter"' path to clf 

     '_p_r_o_b_e_F_i_l_e': Object of class '"ScalarCharacter"' ~~ 

     '_t_r_a_n_s_F_i_l_e': Object of class '"ScalarCharacter"' ~~ 

     '_c_h_i_p_N_a_m_e': Object of class '"character"' ~~ 

     '_m_a_n_u_f_a_c_t_u_r_e_r': Object of class '"character"' ~~ 

     '_g_e_n_o_m_e_b_u_i_l_d': Object of class '"character"' ~~ 

     '_p_d_I_n_f_o_O_b_j_e_c_t_N_a_m_e': Object of class '"character"' ~~ 

     '_g_e_o_m_e_t_r_y': Object of class '"integer"' ~~ 

     '_n_a_m_e': Object of class '"character"' ~~ 

     '_v_e_r_s_i_o_n': Object of class '"character"' ~~ 

     '_l_i_c_e_n_s_e': Object of class '"character"' ~~ 

     '_a_u_t_h_o_r': Object of class '"character"' ~~ 

     '_e_m_a_i_l': Object of class '"character"' ~~ 

     '_u_r_l': Object of class '"character"' ~~ 

     '_b_i_o_c_V_i_e_w_s': Object of class '"character"' ~~ 

_E_x_t_e_n_d_s:

     Class '"PDInfoPkgSeed"', directly. Class '"PkgSeed"', by class
     "PDInfoPkgSeed", distance 2.

_M_e_t_h_o_d_s:


     _c_h_i_p_N_a_m_e 'signature(object = "AffyGenePDInfoPkgSeed")': ... 

     _i_n_i_t_i_a_l_i_z_e 'signature(.Object = "AffyGenePDInfoPkgSeed")': ... 

     _m_a_k_e_P_d_I_n_f_o_P_a_c_k_a_g_e 'signature(object = "AffyGenePDInfoPkgSeed")':
          ... 

_A_u_t_h_o_r(_s):

     B. Carvalho

_E_x_a_m_p_l_e_s:

     showClass("AffyGenePDInfoPkgSeed")

