AffyExpressionPDInfo-class	PDInfo-class
AffyGenePDInfo-class	AffyGenePDInfo-class
affyPlatforms	affyPlatforms
AffySNPCNVPDInfo-class	DBPDInfo-class
AffySNPPDInfo-class	DBPDInfo-class
AffyTilingPDInfo-class	PDInfo-class
calculateCopyNumber	calculateCopyNumber
calculateCopyNumber,SnpCallSetPlus-method	SnpCallSetPlus-class
calls	SnpCallSet-methods
calls,oligoSnpSet-method	oligoSnpSet-methods
calls,SnpCallSet-method	SnpCallSet-methods
calls,SnpLevelSet-method	SnpLevelSet-class
calls<-	SnpCallSet-methods
calls<-,oligoSnpSet,matrix-method	oligoSnpSet-methods
calls<-,SnpCallSet,matrix-method	SnpCallSet-methods
calls<-,SnpLevelSet,matrix-method	SnpLevelSet-class
callsConfidence	SnpCallSet-methods
callsConfidence,oligoSnpSet-method	oligoSnpSet-methods
callsConfidence,SnpCallSet-method	SnpCallSet-methods
callsConfidence,SnpLevelSet-method	SnpLevelSet-class
callsConfidence<-	SnpCallSet-methods
callsConfidence<-,oligoSnpSet,matrix-method	oligoSnpSet-methods
callsConfidence<-,SnpCallSet,matrix-method	SnpCallSet-methods
callsConfidence<-,SnpLevelSet,matrix-method	SnpLevelSet-class
chromosome	chromosome
chromosome,SnpLevelSet-method	SnpLevelSet-class
chromosome<-	chromosome
chromosome<-,AnnotatedDataFrame,character-method	chromosome
chromosome<-,SnpLevelSet,character-method	SnpLevelSet-class
cnConfidence	SnpCopyNumberSet-methods
cnConfidence,oligoSnpSet-method	oligoSnpSet-methods
cnConfidence,SnpCopyNumberSet-method	SnpCopyNumberSet-methods
cnConfidence,SnpLevelSet-method	SnpLevelSet-class
cnConfidence<-	SnpCopyNumberSet-methods
cnConfidence<-,oligoSnpSet,matrix-method	oligoSnpSet-methods
cnConfidence<-,SnpCopyNumberSet,matrix-method	SnpCopyNumberSet-methods
cnConfidence<-,SnpLevelSet,matrix-method	SnpLevelSet-class
coerce,SnpCallSetPlus,oligoSnpSet-method	SnpCallSetPlus-class
combine,SnpLevelSet,SnpLevelSet-method	SnpLevelSet-class
copyNumber	SnpCopyNumberSet-methods
copyNumber,oligoSnpSet-method	oligoSnpSet-methods
copyNumber,SnpCopyNumberSet-method	SnpCopyNumberSet-methods
copyNumber,SnpLevelSet-method	SnpLevelSet-class
copyNumber<-	SnpCopyNumberSet-methods
copyNumber<-,oligoSnpSet,matrix-method	oligoSnpSet-methods
copyNumber<-,SnpCopyNumberSet,matrix-method	SnpCopyNumberSet-methods
copyNumber<-,SnpLevelSet,matrix-method	SnpLevelSet-class
db	db
db,DBPDInfo-method	db
db,SnpCallSet-method	db
db,SnpCallSetPlus-method	SnpCallSetPlus-class
db,SnpLevelSet-method	SnpLevelSet-class
db-methods	db
DBPDInfo-class	DBPDInfo-class
ExonFeatureSet-class	FeatureSetExtensions-class
ExpressionFeatureSet-class	FeatureSetExtensions-class
ExpressionPDInfo-class	PDInfo-class
FeatureSet-class	FeatureSet-class
GeneFeatureSet-class	GeneSTFeatureSet-class
initialize,oligoSnpSet-method	oligoSnpSet-methods
initialize,SnpCallSet-method	SnpSetExtensions-class
initialize,SnpCallSetPlus-method	SnpCallSetPlus-class
initialize,SnpCnvCallSetPlus-method	SnpCallSetPlus-class
initialize,SnpCopyNumberSet-method	SnpSetExtensions-class
initialize,SnpQSet-method	SnpQSet-class
initialize,TilingQSet-method	TilingQSet-class
NgsExpressionPDInfo-class	PDInfo-class
NgsTilingPDInfo-class	PDInfo-class
oligoSnpSet-class	oligoSnpSet-methods
PDInfo-class	PDInfo-class
platformDesign-class	platformDesign-class
position	position
position,SnpLevelSet-method	SnpLevelSet-class
QuantificationSet-class	QuantificationSet-class
SnpCallSet-class	SnpSetExtensions-class
SnpCallSet-methods	SnpSetExtensions-class
SnpCallSetPlus-class	SnpCallSetPlus-class
SnpCnvCallSetPlus-class	SnpCallSetPlus-class
SnpCnvFeatureSet-class	SnpCnvFeatureSet-class
SNPCNVPDInfo-class	PDInfo-class
SnpCnvQSet-class	SnpCnvQSet-class
SnpCopyNumberSet-class	SnpSetExtensions-class
SnpCopyNumberSet-methods	SnpSetExtensions-class
SnpFeatureSet-class	FeatureSetExtensions-class
SnpLevelSet-class	SnpLevelSet-class
SNPPDInfo-class	PDInfo-class
SnpQSet-class	SnpQSet-class
TilingFeatureSet-class	FeatureSetExtensions-class
TilingPDInfo-class	PDInfo-class
TilingQSet-class	TilingQSet-class
