AffyGenePDInfo-class    Class AffyGenePDInfo
DBPDInfo-class          Class "DBPDInfo"
ExonFeatureSet-class    "FeatureSet" Extensions
FeatureSet-class        Classes for Feature level data
GeneFeatureSet-class    Class GeneFeatureSet
PDInfo-class            Classes "PDInfo" and "SNPPDInfo"
QuantificationSet-class
                        Class "QuantificationSet"
SnpCallSet-class        "SnpSet" Extensions
SnpCallSetPlus-class    Class "SnpCallSetPlus"
SnpCnvFeatureSet-class
                        Class "SnpCnvFeatureSet"
SnpCnvQSet-class        Class "SnpCnvQSet"
SnpLevelSet-class       Class "SnpLevelSet"
SnpQSet-class           Class "SnpQSet"
TilingQSet-class        Class "TilingQSet"
affyPlatforms           Available Affymetrix platforms for SNP arrays
calculateCopyNumber     Calculates copy number as the average of
                        SNP-level summaries from the A and B alleles
calls                   Accessors for SnpCallSet
chromosome              Accessor for chromosome information
cnConfidence            Accessors for SnpCopyNumberSet objects
db                      Get the connection to the SQLite Database
oligoSnpSet-class       Methods for oligoSnpSet class
platformDesign-class    Class "platformDesign"
position                Accessor to position information
