flowClust-package         package:flowClust         R Documentation

_C_l_u_s_t_e_r_i_n_g _f_o_r _F_l_o_w _C_y_t_o_m_e_t_r_y

_D_e_s_c_r_i_p_t_i_o_n:

     Robust model-based clustering using a t mixture model with Box-Cox
     transformation.

_D_e_t_a_i_l_s:


       Package:    flowClust
       Type:       Package
       Version:    1.7.0
       Depends:    R(>= 2.5.0), methods, mnormt, mclust, ellipse, flowCore
       Collate:    SetClasses.R SetMethods.R plot.R flowClust.R SimulateMixture.R
       biocViews:  Clustering, Statistics, Visualization
       License:    Artistic-2.0
       Built:      R 2.6.1; universal-apple-darwin8.10.1; 2008-03-26 20:54:42; unix

_I_n_d_e_x:

'_b_o_x' Box-Cox Transformation

'_d_e_n_s_i_t_y,_f_l_o_w_C_l_u_s_t-_m_e_t_h_o_d' Grid of Density Values for the Fitted t
     Mixture Model with Box-Cox Transformation

'_d_m_v_t' Density of the Multivariate t Distribution

'_f_l_o_w_C_l_u_s_t' Robust Model-based Clustering for Flow Cytometry

'_h_i_s_t,_f_l_o_w_C_l_u_s_t-_m_e_t_h_o_d' 1-D Density Plot (Histogram) of Clustering
     Results

'_M_a_p,_f_l_o_w_C_l_u_s_t-_m_e_t_h_o_d' Cluster Assignment Based on Clustering Results

'_m_i_s_c_e_l_l_a_n_e_o_u_s' Various Functions for Retrieving Information from
     Clustering Results

'_p_l_o_t,_f_l_o_w_C_l_u_s_t-_m_e_t_h_o_d' Scatterplot of Clustering Results

'_p_l_o_t,_f_l_o_w_D_e_n_s-_m_e_t_h_o_d' Contour or Image Plot of Clustering Results

'_p_l_o_t,_f_l_o_w_F_r_a_m_e,_t_m_i_x_F_i_l_t_e_r_R_e_s_u_l_t-_m_e_t_h_o_d' Scatterplot / 1-D Density Plot
     of Filtering (Clustering) Results

'_r_b_o_x' Reverse Box-Cox Transformation

'_r_u_l_e_O_u_t_l_i_e_r_s,_f_l_o_w_C_l_u_s_t-_m_e_t_h_o_d' Showing or Modifying the Rule used to
     Identify Outliers

'_s_h_o_w,_f_l_o_w_C_l_u_s_t-_m_e_t_h_o_d' Show Method for 'flowClust' /
     'tmixFilterResult' Object

'_s_h_o_w,_t_m_i_x_F_i_l_t_e_r-_m_e_t_h_o_d' Show Method for 'tmixFilter' Object

'_S_i_m_u_l_a_t_e_M_i_x_t_u_r_e' Random Generation from a t Mixture Model

'_s_p_l_i_t,_f_l_o_w_C_l_u_s_t-_m_e_t_h_o_d' Splitting Data Based on Clustering Results

'_S_u_b_s_e_t,_f_l_o_w_C_l_u_s_t-_m_e_t_h_o_d' Subsetting Data Based on Clustering Results

'_s_u_m_m_a_r_y,_f_l_o_w_C_l_u_s_t-_m_e_t_h_o_d' Summary Method for 'flowClust' Object

'_t_m_i_x_F_i_l_t_e_r' Creating Filters and Filtering Flow Cytometry Data

_N_o_t_e:

     Further information is available in the vignette.

_A_u_t_h_o_r(_s):

     Raphael Gottardo <raph@stat.ubc.ca>, Kenneth Lo <c.lo@stat.ubc.ca>

     Maintainer: Raphael Gottardo <raph@stat.ubc.ca>

_R_e_f_e_r_e_n_c_e_s:

     Lo, K., Brinkman, R. R. and Gottardo, R. (2008) Automated Gating
     of Flow Cytometry Data via Robust Model-based Clustering.
     _Cytometry A_ *73*, 321-332.

