details               package:exonmap               R Documentation

_G_e_t _d_e_t_a_i_l_e_d _a_n_n_o_t_a_t_i_o_n _f_o_r _e_x_o_n_s, _t_r_a_n_s_c_r_i_p_t_s _a_n_d _g_e_n_e_s

_D_e_s_c_r_i_p_t_i_o_n:

     Given a character vector of Ensembl database names, get more
     detailed annotation from X:Map.

_U_s_a_g_e:

       gene.details(v)
       transcript.details(v)
       exon.details(v)

_A_r_g_u_m_e_n_t_s:

       v: A character vector of database identifiers

_D_e_t_a_i_l_s:

     Connects to the X:Map database to retrieve data. Before these
     functions can be used, 'xmapConnect' must have been called.

_V_a_l_u_e:

     A 'data.frame'.

_A_u_t_h_o_r(_s):

     C.J. Miller, M.J. Okoniewski

_R_e_f_e_r_e_n_c_e_s:

     <URL: http://xmap.picr.man.ac.uk>

_S_e_e _A_l_s_o:

     xmapConnect filters mappings

_E_x_a_m_p_l_e_s:

       if(interactive()) {
         xmapConnect()
         gene        <-  probeset.to.gene(c("3743919"))
         transcripts <- gene.to.transcript(gene)
         exons       <- gene.to.exon(gene)
         gene.details(gene)
         transcript.details(transcripts)
         exon.details(exons)
       }

