deDGEList-class            package:edgeR            R Documentation

_d_i_f_f_e_r_e_n_t_i_a_l _e_x_p_r_e_s_s_i_o_n _o_f _D_i_g_i_t_a_l _G_e_n_e _E_x_p_r_e_s_s_i_o_n _d_a_t_a - _c_l_a_s_s

_D_e_s_c_r_i_p_t_i_o_n:

     A simple list-based class for storing results of differential
     expression analysis for DGE data

_S_l_o_t_s/_L_i_s_t _C_o_m_p_o_n_e_n_t_s:

     Objects of this class contain the following list components:

       'ps':      list containing estimates of 'p' parameter.
       'r':       numeric vector of size parameter ('1/phi') where 'phi' is negative binomial dispersion.
       'pseudo':  numeric matrix with the pseudo-counts.
       'M':       numeric scalar with the library size that pseudo counts are mapped to.
       'exact':   numeric vector of exact p-values (unadjusted).

_M_e_t_h_o_d_s:

     This class inherits directly from class 'list' so any operation
     appropriate for lists will work on objects of this class.
     'deDGEList' objects also have a 'show' method.

_A_u_t_h_o_r(_s):

     Mark Robinson

