Entry: DGEList-class
Aliases: DGEList-class DGEList show,DGEList-method
Keywords: classes
Description: Digital Gene Expression data - class
URL: ../../../library/edgeR/html/DGEList.html

Entry: EBList-class
Aliases: EBList-class show,EBList-method
Keywords: classes
Description: differential expression of Digital Gene Expression data - class
URL: ../../../library/edgeR/html/EBList.html

Entry: alpha.approxeb
Aliases: alpha.approxeb
Keywords: file
Description: Estimate the prior weight, alpha
URL: ../../../library/edgeR/html/alpha.approxeb.html

Entry: approx.expected.info
Aliases: approx.expected.info
Keywords: file
Description: Approximate of expected information (Fisher information)
URL: ../../../library/edgeR/html/approx.expected.info.html

Entry: condLogLikDerDelta
Aliases: condLogLikDerDelta
Keywords: file
Description: Conditional log-likelihood in terms of delta
URL: ../../../library/edgeR/html/condLogLikDerDelta.html

Entry: condLogLikDerSize
Aliases: condLogLikDerSize
Keywords: file
Description: Conditional log-likelihood in terms of size
URL: ../../../library/edgeR/html/condLogLikDerSize.html

Entry: deDGE
Aliases: deDGE
Keywords: algebra
Description: Compute moderated differential expression scores for digital gene expression (DGE) data
URL: ../../../library/edgeR/html/deDGE.html

Entry: deDGEList-class
Aliases: deDGEList-class show,deDGEList-method
Keywords: classes
Description: differential expression of Digital Gene Expression data - class
URL: ../../../library/edgeR/html/deDGEList.html

Entry: estimatePs
Aliases: estimatePs
Keywords: file
Description: Estimate expression proportions
URL: ../../../library/edgeR/html/estimatePs.html

Entry: exactTestNB
Aliases: exactTestNB
Keywords: algebra
Description: An exact test for differences between two negative binomial groups
URL: ../../../library/edgeR/html/exactTestNB.html

Entry: findMaxD2
Aliases: findMaxD2
Keywords: algebra
Description: Maximizes the negative binomial likelihood
URL: ../../../library/edgeR/html/findMaxD2.html

Entry: getData
Aliases: getData
Keywords: file
Description: Extract data table from DGEList object
URL: ../../../library/edgeR/html/getData.html

Entry: interpolateHelper
Aliases: interpolateHelper
Keywords: algebra
Description: Quantile Adjustment interpolator
URL: ../../../library/edgeR/html/interpolateHelper.html

Entry: logLikDerP
Aliases: logLikDerP
Keywords: file
Description: Log-likelihood for proportion
URL: ../../../library/edgeR/html/logLikDerP.html

Entry: plotMA
Aliases: plotMA plotMA,deDGEList-method
Keywords: file
Description: MA-like plot for deDGEList objects
URL: ../../../library/edgeR/html/plotMA.html

Entry: quantileAdjust
Aliases: quantileAdjust
Keywords: file
Description: Normalizes a dataset by using a quantile adjustment
URL: ../../../library/edgeR/html/quantileAdjust.html

Entry: readDGE
Aliases: readDGE
Keywords: file
Description: Read a list of files containing DGE data
URL: ../../../library/edgeR/html/readDGE.html

Entry: tau2.0.objective
Aliases: tau2.0.objective
Keywords: algebra
Description: Objective function for tau2
URL: ../../../library/edgeR/html/tau2.0.objective.html

Entry: topTags
Aliases: topTags
Keywords: algebra
Description: Displays the top differentially expressed tags in a table
URL: ../../../library/edgeR/html/topTags.html
