Entry: analysis.bgx
Aliases: analysis.bgx plotExpressionDensity plotDEDensity plotDEHistogram rankByDE plotDiffRank
Keywords: IO
Description: Analyse BGX output.
URL: ../../../library/bgx/html/analysis.bgx.html

Entry: bgx
Aliases: bgx standalone.bgx
Keywords: manip
Description: Fully Bayesian integrated approach to the analysis of Affymetrix GeneChip data
URL: ../../../library/bgx/html/bgx.html

Entry: mcmc.bgx
Aliases: mcmc.bgx
Keywords: internal
Description: Internal wrapper function for calling the bgx C++ function.
URL: ../../../library/bgx/html/mcmc.bgx.html

Entry: readOutput.bgx
Aliases: readOutput.bgx
Keywords: IO
Description: Read in the output from a BGX run.
URL: ../../../library/bgx/html/readOutput.bgx.html

Entry: saveAffinityPlot.bgx
Aliases: saveAffinityPlot.bgx
Keywords: internal
Description: Save a plot of affinity categorisation.
URL: ../../../library/bgx/html/saveAffinityPlot.bgx.html

Entry: setupVars.bgx
Aliases: setupVars.bgx
Keywords: internal
Description: Initialise variables needed to run BGX simulation.
URL: ../../../library/bgx/html/setupVars.bgx.html
