gi2007                 package:SLGI                 R Documentation

_S_y_n_t_h_e_t_i_c _G_e_n_e_t_i_c _I_n_t_e_r_a_c_t_i_o_n _d_a_t_a _f_r_o_m _C_o_l_l_i_n_s _e_t _a_l

_D_e_s_c_r_i_p_t_i_o_n:

     The data 'gi2007' are a 754 by 754 set of genetic interactions
     that were tested pairwise by either deletion or decreased
     abundance messenger RNA perturbation.

_U_s_a_g_e:

       data(gi2007)
       data(gi2007.metadata)

_F_o_r_m_a_t:

     The 'gi2007' data are a 754 by 754 matrix where values indicate a
     score for a synthetic genetic interaction. An 'NA' indicates that
     the genetic interaction was not measured.

     'gi2007.metadata' is a data.frame of dimensions 754 rows and two
     columns. The columns are the systematic names and the mutation
     (which is typically either 'DAMP', 'DELETION' or the name of the
     alternate allele that was tested.  In 11 cases an alternative
     allele was tested.

_R_e_f_e_r_e_n_c_e_s:

     Collins et al. Nature, 2007, Vol 446, p. 806-810. Data are
     available as supplementary material.

_E_x_a_m_p_l_e_s:

     data(gi2007)
     data(gi2007.metadata)

