compare                 package:SLGI                 R Documentation

_C_o_m_p_a_r_e _o_b_s_e_r_v_e_d _d_a_t_a _t_o _e_x_p_e_c_t_e_d _i_n _p_e_r_m_u_t_a_t_i_o_n _m_o_d_e_l_s

_D_e_s_c_r_i_p_t_i_o_n:

     This method summarizes the result of the 'modelSLGI' function.

_U_s_a_g_e:

     ## S4 method for signature 'siResult':
     compare(x)

_A_r_g_u_m_e_n_t_s:

       x: a 'siResult' object to summarize

_D_e_t_a_i_l_s:

     This compares the number of observed interactions to the number of
     expected interactions in each permutation model. It counts how
     many times the number of observed interactions is greater than the
     number of expected interactions (from the permutations) and
     divides by the number of permutations applied.

_V_a_l_u_e:

     Numerical vector

_A_u_t_h_o_r(_s):

     N. LeMeur

_S_e_e _A_l_s_o:

     _modelSLGI_

_E_x_a_m_p_l_e_s:

     data(ScISIC)
     data(Atong)
     data(SGA)
     model <-  modelSLGI(Atong, universe= SGA, interactome=ScISIC, type="intM", perm=2)
     ans <- compare(model)

