compareReplicaPlates        package:RNAither        R Documentation

_C_o_m_p_a_r_e _r_e_p_l_i_c_a _p_l_a_t_e_s

_D_e_s_c_r_i_p_t_i_o_n:

     Generates plots comparing the same plates in different experiments
     pairwise.

_U_s_a_g_e:

     compareReplicaPlates(header, dataset, plotTitle, col4val, showPlot)

_A_r_g_u_m_e_n_t_s:

  header: the header of a dataset file generated with
          'generateDatasetFile' 

 dataset: an R data frame generated with 'generateDatasetFile' 

plotTitle: the plot title 

 col4val: a character string specifying the column whose values will be
          used for the plot 

showPlot: 0 or 1. 1 will open one or several plot windows in the R GUI,
          0 will only save the plot(s) without opening windows 

_V_a_l_u_e:

     For each plate, plots of pairwise comparisons between replicate
     intensities are generated and saved as a pdf file named after the
     experiment name specified in the header concatenated with the '
     plotTitle '.

_S_e_e _A_l_s_o:

     'compareReplicates'

_E_x_a_m_p_l_e_s:

     data(exampleHeader, package="RNAither")
     data(exampleDataset, package="RNAither")

     compareReplicaPlates(header, dataset, "Comparison of replica plate", "SigIntensity", 1)

