bget                package:KEGGSOAP                R Documentation

_C_l_i_e_n_t-_s_i_d_e _i_n_t_e_r_f_a_c_e _t_o _o_b_t_a_i_n _K_E_G_G _d_a_t_a_b_a_s_e _e_n_t_r_i_e_s _b_y _a _l_i_s_t
_o_f _e_n_t_r_y _i_d_e_n_t_i_f_i_e_r_s

_D_e_s_c_r_i_p_t_i_o_n:

     'bget' is used for retrieving KEGG database entries specified by a
     list of entry identifiers. It accepts all the KEGG bget commond
     line options as a character string. Number of entries retrieved at
     a time is restricted up to 100.

_U_s_a_g_e:

     bget(bget.command)

_A_r_g_u_m_e_n_t_s:

bget.command: 'bget.command' a character string of KEGG bget command

_V_a_l_u_e:

     a character string of KEGG bget search result.

_A_u_t_h_o_r(_s):

     Nianhua Li

_R_e_f_e_r_e_n_c_e_s:

     <URL: http://www.genome.jp/kegg/docs/keggapi_manual.html#label:40>

_E_x_a_m_p_l_e_s:

             # retrieve two KEGG/GENES entries
             bget("eco:b0002 hin:tRNA-Cys-1")
             # retrieve nucleic acid sequences in a FASTA format
             bget("-f -n n eco:b0002 hin:tRNA-Cys-1")
             # retrieve amino acid sequence in a FASTA format
             bget("-f -n a eco:b0002")

