Entry: analyseCGH
Aliases: analyseCGH
Keywords: 
Description: GLAD analysis
URL: ../../../library/ITALICS/html/GLAD.GLAD.html

Entry: ITALICS
Aliases: ITALICS Italics italics
Keywords: 
Description: Affymetrix SNP chip normalization
URL: ../../../library/ITALICS/html/ITALICSNew.html

Entry: trainITALICS
Aliases: trainITALICS trainItalics trainitalics
Keywords: 
Description: ITALICS training
URL: ../../../library/ITALICS/html/ITALICSTrain.html

Entry: getConfDat
Aliases: getConfDat
Keywords: 
Description: Elimination of badly predicted probes
URL: ../../../library/ITALICS/html/Model.GetConfDat.html

Entry: getCorrection
Aliases: getCorrection
Keywords: 
Description: Correction
URL: ../../../library/ITALICS/html/Model.GetCorrection.html

Entry: getEffet
Aliases: getEffet
Keywords: 
Description: Effet
URL: ../../../library/ITALICS/html/Model.GetEffet.html

Entry: getModel
Aliases: getModel
Keywords: 
Description: Regression Model
URL: ../../../library/ITALICS/html/Model.GetModel.html

Entry: getResidu
Aliases: getResidu
Keywords: 
Description: Correction
URL: ../../../library/ITALICS/html/Model.GetResidu.html

Entry: addInfo
Aliases: addInfo addInfo addInfo
Keywords: 
Description: add info to quartet annotation
URL: ../../../library/ITALICS/html/New.AddInfo.html

Entry: fromQuartetToSnp
Aliases: fromQuartetToSnp fromQuartetToSnp fromQuartetToSnp
Keywords: 
Description: Compute the copy number of each SNP from its quartets intensities
URL: ../../../library/ITALICS/html/New.fromQuartetToSnp.html

Entry: fromSnpToQuartet
Aliases: fromSnpToQuartet fromSnpToQuartet fromSnpToQuartet
Keywords: 
Description: Function to get from snp to quartet
URL: ../../../library/ITALICS/html/New.fromSnpToQuartet.html

Entry: getQuartet
Aliases: getQuartet getQuartet getQuartet
Keywords: 
Description: Function to retrieve the information of each quartet
URL: ../../../library/ITALICS/html/New.getQuartet.html

Entry: getSnpInfo
Aliases: getSnpInfo getSnpInfo getSnpInfo
Keywords: 
Description: Function to retrieve the chromosome and the position of each SNP on a given Affymetrix SNP array
URL: ../../../library/ITALICS/html/New.getSnpInfo.html

Entry: readQuartetCopyNb
Aliases: readQuartetCopyNb readQuartetCopyNb readQuartetCopyNb
Keywords: 
Description: Read PM probes of selected quartets and compute the quartet intensity
URL: ../../../library/ITALICS/html/New.readQuartetCopyNb.html
