Entry: activeView-methods
Aliases: activeView activeView<- activeView-methods activeView<--methods activeView,browserSession-method activeView,argoSession-method activeView<-,argoSession-method activeView,argoView-method activeView,ucscView-method
Keywords: methods
Description: Accessing the active view
URL: ../../../library/rtracklayer/html/activeView-methods.html

Entry: argoSession-class
Aliases: argoSession-class close,argoSession-method initialize,argoSession-method
Keywords: classes
Description: Class "argoSession"
URL: ../../../library/rtracklayer/html/argoSession-class.html

Entry: argoView-class
Aliases: argoView-class close,argoView-method
Keywords: classes
Description: Class "argoView"
URL: ../../../library/rtracklayer/html/argoView-class.html

Entry: basicTrackLine-class
Aliases: basicTrackLine-class coerce,character,basicTrackLine-method coerce,basicTrackLine,character-method
Keywords: classes
Description: Class "basicTrackLine"
URL: ../../../library/rtracklayer/html/basicTrackLine-class.html

Entry: browseGenome
Aliases: browseGenome browseGenome,ANY-method
Keywords: interface
Description: Browse a genome
URL: ../../../library/rtracklayer/html/browseGenome.html

Entry: browserSession-class
Aliases: browserSession-class show,browserSession-method
Keywords: classes
Description: Class "browserSession"
URL: ../../../library/rtracklayer/html/browserSession-class.html

Entry: browserSession-methods
Aliases: browserSession browserSession-methods browserSession,character-method browserSession,browserView-method
Keywords: methods
Description: Get a genome browser session
URL: ../../../library/rtracklayer/html/browserSession-methods.html

Entry: browserView-class
Aliases: browserView-class show,browserView-method
Keywords: classes
Description: Class "browserView"
URL: ../../../library/rtracklayer/html/browserView-class.html

Entry: browserView-methods
Aliases: browserView browserView-methods browserView,ucscSession-method browserView,argoSession-method
Keywords: methods
Description: Getting browser views
URL: ../../../library/rtracklayer/html/browserView-methods.html

Entry: browserViews-methods
Aliases: browserViews browserViews-methods browserViews,ucscSession-method browserViews,argoSession-method
Keywords: methods
Description: Getting the browser views
URL: ../../../library/rtracklayer/html/browserViews-methods.html

Entry: chrid-class
Aliases: chrid-class
Keywords: classes
Description: Class "chrid"
URL: ../../../library/rtracklayer/html/chrid-class.html

Entry: chrid-methods
Aliases: chrid chrid-methods chrid,trackSet-method chrid,character-method chrid,ANY-method
Keywords: methods
Description: Getting chromosome ids
URL: ../../../library/rtracklayer/html/chrid-methods.html

Entry: dataVals-methods
Aliases: dataVals dataVals-methods dataVals,trackSet-method
Keywords: methods
Description: Get data values
URL: ../../../library/rtracklayer/html/dataVals-methods.html

Entry: export
Aliases: export export,ANY,ANY,character-method export,ANY,missing,character-method export,ANY,character,missing-method export,ANY,character,character-method
Keywords: IO
Description: Export objects to connections
URL: ../../../library/rtracklayer/html/export.html

Entry: export-tracks
Aliases: export.gff export.gff,trackSet-method export.gff1 export.gff2 export.gff3 export.gff1,ANY-method export.gff2,ANY-method export.gff3,ANY-method export.bed export.bed,trackSet-method export.wig export.wig,trackSet-method export.ucsc export.ucsc,trackSet-method export.ucsc,trackSets-method
Keywords: IO
Description: Export tracks
URL: ../../../library/rtracklayer/html/export.gff.html

Entry: feature-variables
Aliases: featChrom featStart featEnd featStrand featChrom,trackSet-method featStart,trackSet-method featEnd,trackSet-method featStrand,trackSet-method
Keywords: manip
Description: Get track feature variables
URL: ../../../library/rtracklayer/html/featChrom.html

Entry: genomeBrowsers
Aliases: genomeBrowsers
Keywords: interface
Description: Get available genome browsers
URL: ../../../library/rtracklayer/html/genomeBrowsers.html

Entry: genomeSegment-class
Aliases: genomeSegment-class merge,genomeSegment,genomeSegment-method
Keywords: classes
Description: Class "genomeSegment"
URL: ../../../library/rtracklayer/html/genomeSegment-class.html

Entry: genomeSegment-methods
Aliases: genomeSegment genomeSegment<- genomeSegment<-,ucscView-method genomeSegment<-,argoView-method genomeSegment-methods genomeSegment,character-method genomeSegment,missing-method genomeSegment,trackSet-method genomeSegment,trackSets-method genomeSegment,browserSession-method genomeSegment,ucscSession-method genomeSegment,ucscView-method genomeSegment,argoView-method genomeSegment,ucscCart-method
Keywords: methods
Description: Accessing a segment of a genome
URL: ../../../library/rtracklayer/html/genomeSegment-methods.html

Entry: genomeSequence-methods
Aliases: genomeSequence genomeSequence-methods genomeSequence,ucscSession-method genomeSequence,argoSession-method
Keywords: methods
Description: Retrieving a genome sequence
URL: ../../../library/rtracklayer/html/genomeSequence-methods.html

Entry: import
Aliases: import import,ANY,character,ANY-method import,character,missing,ANY-method import,character,character,ANY-method import,missing,ANY,character-method
Keywords: IO
Description: Importing objects
URL: ../../../library/rtracklayer/html/import.html

Entry: import.gff
Aliases: import.gff import.gff,ANY-method import.gff1,ANY-method import.gff2,ANY-method import.gff3,ANY-method import.wig,ANY-method import.gff1 import.gff2 import.gff3 import.wig import.bed import.bed,ANY-method import.ucsc import.ucsc,ANY-method
Keywords: IO
Description: Importing tracks
URL: ../../../library/rtracklayer/html/import.gff.html

Entry: laySequence-methods
Aliases: laySequence laySequence-methods laySequence,argoSession,character-method
Keywords: methods
Description: Load a sequence
URL: ../../../library/rtracklayer/html/laySequence-methods.html

Entry: layTrack-methods
Aliases: layTrack layTrack-methods layTrack,browserSession,trackSet-method layTrack,browserSession,trackSets-method layTrack,ucscSession,trackSets-method layTrack,argoSession,trackSet-method
Keywords: methods
Description: Laying tracks
URL: ../../../library/rtracklayer/html/layTrack-methods.html

Entry: trackData
Aliases: trackData trackData,trackSet-method
Keywords: manip
Description: Get track data
URL: ../../../library/rtracklayer/html/trackData.html

Entry: trackSet-class
Aliases: trackSet-class [.trackSet [,trackSet-method coerce,trackSet,data.frame-method initialize,trackSet-method
Keywords: classes
Description: Class "trackSet"
URL: ../../../library/rtracklayer/html/trackSet-class.html

Entry: trackSet-methods
Aliases: trackSet trackSet-methods trackSet,ucscSession-method trackSet,argoSession-method
Keywords: methods
Description: Get a trackSet
URL: ../../../library/rtracklayer/html/trackSet-methods.html

Entry: trackSets-class
Aliases: trackSets-class
Keywords: classes
Description: Class "trackSets"
URL: ../../../library/rtracklayer/html/trackSets-class.html

Entry: trackSets-methods
Aliases: trackSets trackSets-methods trackSets,trackSet-method trackSets,missing-method trackSets,list-method
Keywords: methods
Description: Getting a list of trackSets
URL: ../../../library/rtracklayer/html/trackSets-methods.html

Entry: tracks-methods
Aliases: tracks tracks<- tracks<--methods tracks<-,ucscTrackModes-method tracks<-,ucscView-method tracks<-,argoView-method tracks-methods tracks,ucscSession-method tracks,ucscTrackModes-method tracks,ucscView-method tracks,argoSession-method tracks,argoView-method
Keywords: methods
Description: Accessing track names
URL: ../../../library/rtracklayer/html/tracks-methods.html

Entry: ucscSession-class
Aliases: ucscSession-class initialize,ucscSession-method
Keywords: classes
Description: Class "ucscSession"
URL: ../../../library/rtracklayer/html/ucscSession-class.html

Entry: ucscTable
Aliases: ucscTable ucscTable,ucscSession-method
Keywords: interface
Description: Get a database table from UCSC
URL: ../../../library/rtracklayer/html/ucscTable.html

Entry: ucscTrackLine-class
Aliases: ucscTrackLine-class coerce,character,ucscTrackLine-method coerce,ucscTrackLine,character-method
Keywords: classes
Description: Class "ucscTrackLine"
URL: ../../../library/rtracklayer/html/ucscTrackLine-class.html

Entry: ucscTrackModes-class
Aliases: ucscTrackModes-class
Keywords: classes
Description: Class "ucscTrackModes"
URL: ../../../library/rtracklayer/html/ucscTrackModes-class.html

Entry: ucscTrackModes-methods
Aliases: ucscTrackModes ucscTrackModes<- ucscTrackModes-methods ucscTrackModes,character-method ucscTrackModes,missing-method ucscTrackModes,ucscView-method ucscTrackModes<--methods ucscTrackModes<-,ucscView,ucscTrackModes-method ucscTrackModes<-,ucscView,character-method ucscTrackModes,ucscTracks-method ucscTrackModes,ucscSession-method
Keywords: methods
Description: Accessing UCSC track modes
URL: ../../../library/rtracklayer/html/ucscTrackModes-methods.html

Entry: ucscTrackSet-class
Aliases: ucscTrackSet-class export.bed,ucscTrackSet-method export.gff,ucscTrackSet-method export.ucsc,ucscTrackSet-method
Keywords: classes
Description: Class "ucscTrackSet"
URL: ../../../library/rtracklayer/html/ucscTrackSet-class.html

Entry: ucscView-class
Aliases: ucscView-class
Keywords: classes
Description: Class "ucscView"
URL: ../../../library/rtracklayer/html/ucscView-class.html

Entry: wigTrackLine-class
Aliases: wigTrackLine-class coerce,character,wigTrackLine-method coerce,wigTrackLine,character-method coerce,wigTrackLine,basicTrackLine-method coerce,basicTrackLine,wigTrackLine-method
Keywords: classes
Description: Class "wigTrackLine"
URL: ../../../library/rtracklayer/html/wigTrackLine-class.html
