rendercMAPPathway         package:pathRender         R Documentation

_R_e_n_d_e_r _p_a_t_h_w_a_y_s _f_r_o_m _c_M_A_P

_D_e_s_c_r_i_p_t_i_o_n:

     Build graphs based on pathway or interaction data from cMAP
     database,  render them using Rgraphviz.

_U_s_a_g_e:

     rendercMAPPathway(pname, ino=0) 

_A_r_g_u_m_e_n_t_s:

   pname: name of the pathway to render

     ino: index of the interaction in the given pathway to render

_D_e_t_a_i_l_s:

     For a given pathway in cMAP database, we build a subgraph for each
     interaction  in the pathway, join them together to form the graph
     for the complete pathway.  The subgraphs for interactions and the
     graph for the pathway include info for  rendering, such as
     labels/shapes/fillcolors for nodes, colors/styles/weights  for
     edges.  If user specifies an index of interaction, only the
     interaction is rendered.  Otherwise, the complete pathway is
     rendered.

_V_a_l_u_e:

     None.  A graphical output is presented.

_A_u_t_h_o_r(_s):

     Li Long <li.long@isb-sib.ch>

_E_x_a_m_p_l_e_s:

        rendercMAPPathway("plateletapppathway")
        rendercMAPPathway("plateletapppathway", 5)
        rendercMAPPathway("hsa00601")
        rendercMAPPathway("hsa00601", 10)

