platformDesign-class      package:oligoClasses      R Documentation

_C_l_a_s_s "_p_l_a_t_f_o_r_m_D_e_s_i_g_n"

_D_e_s_c_r_i_p_t_i_o_n:

     Container for chip information, this is environment-based and is
     being replaced by DBPDInfo.

_O_b_j_e_c_t_s _f_r_o_m _t_h_e _C_l_a_s_s:

     Objects can be created by calls of the form 'new("platformDesign",
     ...)'.

_S_l_o_t_s:


     '_f_e_a_t_u_r_e_I_n_f_o': Object of class '"environment"' containing vectors
          describing the array.

     '_f_e_a_t_u_r_e_T_y_p_e_D_e_s_c_r_i_p_t_i_o_n': Object of class '"list"'

     '_t_y_p_e': Object of class '"character"' describing the type of the
          array ("expression", "exon", "SNP", "tiling"

     '_n_r_o_w': Object of class '"numeric"' providing the number of rows.

     '_n_c_o_l': Object of class '"numeric"' providing the number of
          columns

     '_n_w_e_l_l_s': Object of class '"numeric"' providing the number of
          wells - NimbleGen specific.

     '_l_o_o_k_u_p': Object of class '"data.frame"': a lookup table for
          complex designs by NimbleGen.

     '_i_n_d_e_x_e_s': Object of class '"list"' ~~ 

     '_p_l_a_t_f_o_r_m_s': Object of class '"character"' ~~ 

     '_m_a_n_u_f_a_c_t_u_r_e_r': Object of class '"character"' ~~ 

     '_g_e_n_o_m_e_b_u_i_l_d': Object of class '"character"' ~~ 

_E_x_t_e_n_d_s:

     Class '"PDInfo"', directly.

_M_e_t_h_o_d_s:

     No methods defined with class "platformDesign" in the signature.

_E_x_a_m_p_l_e_s:

     ##---- Should be DIRECTLY executable !! ----

