activeModScoreHTML        package:maigesPack        R Documentation

_S_a_v_e _H_T_M_L _f_i_l_e _w_i_t_h _g_l_o_b_a_l _g_e_n_e _s_c_o_r_e_s _f_r_o_m _f_u_n_c_t_i_o_n_a_l _g_e_n_e
_g_r_o_u_p_s _c_l_a_s_s_i_f_i_c_a_t_i_o_n

_D_e_s_c_r_i_p_t_i_o_n:

     This function takes an object of class 'maigesActMod', that is
     generated using the function 'activeMod' to do functional
     classification of gene groups, and save an HTML file with global
     score for genes separated by gene groups (modules).

_U_s_a_g_e:

     activeModScoreHTML(mod=NULL, dir="./", fileSave="scores")

_A_r_g_u_m_e_n_t_s:

     mod: object of class 'maigesActMod', resulted from functional
          classification of gene groups.

     dir: character string giving the folder to save the file.

fileSave: string giving the file name. You don't need to put the
          extension 'html', it will be put automatically.

_V_a_l_u_e:

     This function generates an HTML file and don't return any R value
     or object.

_A_u_t_h_o_r(_s):

     Gustavo H. Esteves <gesteves@vision.ime.usp.br>

_S_e_e _A_l_s_o:

     'plot.maigesActMod', 'activeMod'

_E_x_a_m_p_l_e_s:

     ## Loading a little dataset
     data(gastro)

     ## Doing functional classification of gene groups for 'Tissue' sample label
     gastro.mod = activeMod(gastro.summ, sLabelID="Tissue", cutExp=1,
       cutPhiper=0.05)

     activeModScoreHTML(gastro.mod)

