compSummary            package:goProfiles            R Documentation

_T_h_i_s _f_u_n_c_t_i_o_n _r_e_t_u_r_n_s _a _b_r_i_e_f _s_u_m_m_a_r_y _o_f _t_h_e _c_o_m_p_a_r_i_s_o_n _b_e_t_w_e_e_n _t_w_o (_e_x_p_a_n_d_e_d) _p_r_o_f_i_l_e_s.

_D_e_s_c_r_i_p_t_i_o_n:

     Function to return a brief summary of the comparison between two
     (expanded) profiles.

_U_s_a_g_e:

     compSummary(l, decs = 6)

_A_r_g_u_m_e_n_t_s:

       l: A list of comparison results as returned by a call to
          \texttt{compareGenelists}

    decs: Number of decimal places to use in the output

_V_a_l_u_e:

     A data frame with the summarized results of each comparison. The
     values contained are: \texttt{Sqr.Eucl.Dist}: The squared
     euclidean distance,  \texttt{Standard Err}: The standard error
     estimate, \texttt{pValue} p value of the test,  \texttt{low
     conf.int}Lower value for the desired confidence interval, 
     \texttt{up conf.int}Upper value for the desired condfidence
     interval.

_A_u_t_h_o_r(_s):

     Alex Sanchez

_E_x_a_m_p_l_e_s:

     data(sampleProfiles)
     comparedMF <-compareGOProfiles (pn=expandedWelsh01[['MF']], 
                               qm  = expandedSingh01[['MF']], 
                               pqn0= commonExpandedWelsh01Singh01[['MF']])
     print(comparedMF)
     print(compSummary(comparedMF))

