Package: Ringo
Type: Package
Title: R Investigation of NimbleGen Oligoarrays
Version: 1.4.0
Date: 2008-04-28
Author: Joern Toedling, Oleg Sklyar, Tammo Krueger, Matt Ritchie,
        Wolfgang Huber
Maintainer: J. Toedling <toedling@ebi.ac.uk>
Depends: graphics, methods, Biobase (>= 1.14.1), genefilter,
        geneplotter, limma, vsn, RColorBrewer, SparseM (>= 0.7.0)
Description: The package Ringo simplifies the analysis of two-color
        oligonucleotide microarrays from NimbleGen, which for example
        can be used in ChIP-chip projects. The package employs
        functions from various other packages of the Bioconductor
        project and provides additional NimbleGen-specific and
        ChIP-chip-specific functionalities. Its mainly covered subjects
        are data read-in, quality control, visualisation and
        identification of genomic regions showing enrichment in
        ChIP-chip. Please take note that Ringo is geared towards
        two-color NimbleGen microarrays. For single-channel NimbleGen
        arrays, we recommend the package 'oligo'.
Reference: Joern Toedling, Oleg Sklyar, Tammo Krueger, Jenny J.
        Fischer, Silke Sperling, and Wolfgang Huber (2007). Ringo - an
        R/Bioconductor package for analyzing ChIP-chip readouts. BMC
        Bioinformatics, 8:221.
License: Artistic License 2.0
biocViews:
        Microarray,TwoChannel,DataImport,QualityControl,Preprocessing
LazyLoad: yes
Packaged: Mon May 12 03:56:23 2008; biocbuild
Built: R 2.7.0; i386-pc-mingw32; 2008-05-12 08:45:01; windows
