import("methods")
import("Category")

importFrom("graphics", "plot", "lines", "hist")
importFrom("annotate", "getGOTerm")
importFrom("AnnotationDbi","as.list", "mget")

export("graphTheory",
       "overlap",
       "complexStatus",
       "buildFDMat",
       "getFDgene",
       "reduceM",
       "densityEstimate",
       "truncName",
       "getDescr",
       "KEGG2SCISI",
       "ppiInteract")

exportClasses("CoHyperGParams",
              "CoHyperGResult",
              "testResult",
              "deResult",
              "gtResult")

exportMethods("hyperGTest",
              "summary",
              "geneCounts",
              "universeCounts",
              "pvalues",
              "oddsRatios",
              "expectedCounts",
              "universeBuilder",
              "categoryToEntrezBuilder",
              "plot")
